NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6170.1 Public Homo sapiens 8 FAM110B 24 110 108 CCDS HistoryNCBI Gene:90362Re-query CCDS DB by CCDS ID:6170.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361488.7 ENSP00000355204.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361488.7Link to Ensembl Protein Viewer:ENSP00000355204.3Re-query CCDS DB by Nucleotide ID:ENST00000361488Re-query CCDS DB by Protein ID:ENSP00000355204
Original member Current member EBI ENST00000519262.6 ENSP00000509301.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000519262.6Link to Ensembl Protein Viewer:ENSP00000509301.1Re-query CCDS DB by Nucleotide ID:ENST00000519262Re-query CCDS DB by Protein ID:ENSP00000509301
Original member Current member NCBI NM_001377989.1 NP_001364918.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001377989.1Link to Protein Sequence:NP_001364918.1Re-query CCDS DB by Nucleotide ID:NM_001377989Re-query CCDS DB by Protein ID:NP_001364918Link to BLAST:NP_001364918.1
Original member Current member NCBI NM_001377997.1 NP_001364926.1 Accepted alive Link to Nucleotide Sequence:NM_001377997.1Link to Protein Sequence:NP_001364926.1Re-query CCDS DB by Nucleotide ID:NM_001377997Re-query CCDS DB by Protein ID:NP_001364926Link to BLAST:NP_001364926.1
Original member Current member NCBI NM_001377998.1 NP_001364927.1 Accepted alive Link to Nucleotide Sequence:NM_001377998.1Link to Protein Sequence:NP_001364927.1Re-query CCDS DB by Nucleotide ID:NM_001377998Re-query CCDS DB by Protein ID:NP_001364927Link to BLAST:NP_001364927.1
Original member Current member NCBI NM_147189.4 NP_671722.1 Accepted alive Link to Nucleotide Sequence:NM_147189.4Link to Protein Sequence:NP_671722.1Re-query CCDS DB by Nucleotide ID:NM_147189Re-query CCDS DB by Protein ID:NP_671722Link to BLAST:NP_671722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364918.1 370 Q8TC76 370 100% 0 0
NP_001364926.1 370 Q8TC76 370 100% 0 0
NP_001364927.1 370 Q8TC76 370 100% 0 0
NP_671722.1 370 Q8TC76 370 100% 0 0

Chromosomal Locations for CCDS 6170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 58146231 58147343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGCCCACGGAGACCCTACAGACAGGTAGCATGGTGAAGCCGGTCAGCCCCGCGGGCACCTTCACCTCTG
CTGTGCCCCTGCGCATCCTGAACAAGGGGCCAGACTACTTCCGCAGGCAGGCCGAGCCCAACCCCAAGAG
GCTCAGCGCCGTGGAGAGGCTGGAGGCCGACAAGGCCAAGTACGTCAAGAGCCAGGAGGTGATCAACGCC
AAGCAGGAGCCCGTGAAGCCCGCCGTGCTGGCCAAGCCCCCGGTGTGCCCGGCTGCCAAGCGCGCACTGG
GCAGCCCCACGCTCAAAGTGTTCGGCAACCACGCCAAGACCGAGAGCGGCGTGCAGAGGGAGAACCTGAA
GCTGGAGATCCTGAAGAACATCATCAATAGCTCCGAGGGCTCTAGCTCGGGCTCGGGGCACAAGCACAGC
TCCCGCAACTGGCCGCCCCACCGGTCGGAAGCCACTGACCTGCACCGTCACTCCTTCGCGGAGTCCCTGA
AGGTCTACCCCACGCAGGGCCGCAGGAGCCCGCAGGAGGGCGGCTCCCACGTGGGCAGGAGACTGCTGGA
GCAGTCAGCCGAGTCCTTCCTCCACGTGTCCCACAGCTCTTCGGACATCCGCAAGGTGACCAGCGTGAAG
CCCCTCAAGGCCATCCCCTGCAGTAGCTCTGCCCCTCCCCTGCCTCCCAAGCCCAAAATCGCAGCCATCG
CCTCCATGAAGTCCCCCGAGGCCGACCCTGTGGAACCAGCTTGTGGAGTCAGCCGAAGACCCTCCCTCCA
GCGGTCTAAGTCAGACTTGAGTGACAGATATTTCCGAGTGGACGCGGACGTGGAGAGGTTCTTCAACTAC
TGTGGACTGGACCCGGAAGAGCTGGAAAACCTGGGAATGGAAAACTTTGCAAGGGCTAATTCTGACATAA
TATCCCTCAACTTCCGCAGCGCAAGCATGATCAGCTCAGACTGTGAACAGTCTCAGGACAGTAACAGTGA
CCTTAGAAATGATGACAGTGCCAATGACCGCGTGCCGTATGGCATTTCTGCCATCGAAAGAAATGCTAGA
ATCATCAAGTGGTTATATAGCATCAAACAAGCTAGAGAGTCACAGAAGGTCTCCCATGTGTAA

Translation (370 aa):
MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINA
KQEPVKPAVLAKPPVCPAAKRALGSPTLKVFGNHAKTESGVQRENLKLEILKNIINSSEGSSSGSGHKHS
SRNWPPHRSEATDLHRHSFAESLKVYPTQGRRSPQEGGSHVGRRLLEQSAESFLHVSHSSSDIRKVTSVK
PLKAIPCSSSAPPLPPKPKIAAIASMKSPEADPVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNY
CGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNAR
IIKWLYSIKQARESQKVSHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH