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Report for CCDS93101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93101.1 Public Homo sapiens 21 ERVH48-1 24 110 108 CCDS HistoryNCBI Gene:90625Re-query CCDS DB by CCDS ID:93101.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Endogenous retrovirus

Sequence IDs included in CCDS 93101.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447535.2 ENSP00000504647.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000447535.2Link to Ensembl Protein Viewer:ENSP00000504647.1Re-query CCDS DB by Nucleotide ID:ENST00000447535Re-query CCDS DB by Protein ID:ENSP00000504647
Original member Current member NCBI NM_001308491.2 NP_001295420.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001308491.2Link to Protein Sequence:NP_001295420.1Re-query CCDS DB by Nucleotide ID:NM_001308491Re-query CCDS DB by Protein ID:NP_001295420Link to BLAST:NP_001295420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295420.1 160 M5A8F1 160 100% 0 0

Chromosomal Locations for CCDS 93101.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 42918524 42919006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGCCTGTATCTACCCAACCACTTTCTATACCTCTCTTCCAACCAAAAGTCTTAATATGGGAATATCCC
TCACCACGATCCTAATACTGTCAGTAGCTGTCCTGCTGTCCACAGCAGCCCCTCCGAGCTGCCGTGAGTG
TTATCAGTCTTTGCACTACAGAGGGGAGATGCAACAATACTTTACTTACCATACTCATATAGAAAGATCC
TGTTATGGAAACTTAATCGAGGAATGTGTTGAATCAGGAAAGAGTTATTATAAAGTAAAGAATCTAGGAG
TATGTGGCAGTCGTAATGGGGCTATTTGCCCCAGAGGGAAGCAGTGGCTTTGCTTCACCAAAATTGGACA
ATGGGGAGTAAACACTCAGGTGCTTGAGGACATAAAGAGAGAACAGATTATAGCCAAAGCCAAAGCCTCA
AAACCAACAACTCCCCCTGAAAATCGCCCGCGGCATTTCCATTCCTTTATACAAAAACTATAA

Translation (160 aa):
MACIYPTTFYTSLPTKSLNMGISLTTILILSVAVLLSTAAPPSCRECYQSLHYRGEMQQYFTYHTHIERS
CYGNLIEECVESGKSYYKVKNLGVCGSRNGAICPRGKQWLCFTKIGQWGVNTQVLEDIKREQIIAKAKAS
KPTTPPENRPRHFHSFIQKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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