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Report for CCDS3771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3771.1 Public Homo sapiens 4 PRMT9 24 110 108 CCDS HistoryNCBI Gene:90826Re-query CCDS DB by CCDS ID:3771.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3771.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322396.7 ENSP00000314396.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322396.7Link to Ensembl Protein Viewer:ENSP00000314396.6Re-query CCDS DB by Nucleotide ID:ENST00000322396Re-query CCDS DB by Protein ID:ENSP00000314396
Original member Current member NCBI NM_138364.4 NP_612373.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138364.4Link to Protein Sequence:NP_612373.2Re-query CCDS DB by Nucleotide ID:NM_138364Re-query CCDS DB by Protein ID:NP_612373Link to BLAST:NP_612373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612373.2 845 Q6P2P2-1 845 100% 0 0

Chromosomal Locations for CCDS 3771.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147638532 147638747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147638960 147639082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147642787 147642940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147653852 147654566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147657792 147657975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147660846 147661038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147668539 147668645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147670641 147670743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147672959 147673126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147673638 147673874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147680323 147680471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147683799 147683987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGTCGAACTCGCGGCCCAGGTCCCGCCGAGACGCCGGGGGTGGCGCTGGGGCAGCCGGCCGGGACGAGC
TGGTGTCGCGGTCCTTGCAGAGCGCAGAGCACTGTCTGGGCGTCCAGGACTTCGGCACTGCCTATGCCCA
CTACCTCCTCGTGCTCAGCCTGGCGCCGGAGCTGAAACACGACGTGAAGGAAACTTTTCAGTACACACTT
TTCAGATGGGCTGAAGAGCTTGATGCTCTCAGTCGGATACAAGACTTACTTGGTTGCTATGAGCAGGCCT
TGGAACTGTTTCCTGATGATGAAGTGATTTGCAATAGTATGGGGGAGCATCTCTTCAGAATGGGCTTTAG
GGATGAAGCAGCTGGGTATTTTCATAAAGCAGTGAAGCTAAACCCTGATTTCAGTGATGCAAAGGAGAAT
TTTTATCGTGTTGCAAACTGGTTGGTGGAACGCTGGCACTTTATCATGCTTAATGACACCAAGAGGAATA
CAATTTATAATGCAGCAATCCAAAAGGCAGTTTGTTTGGGGTCCAAAAGTGTTTTGGACATTGGAGCAGG
AACTGGAATACTAAGCATGTTTGCTAAAAAAGCTGGAGCACATTCCGTGTATGCCTGTGAGTTATCCAAG
ACCATGTATGAACTTGCCTGTGATGTCGTGGCAGCAAACAAGATGGAAGCAGGGATCAAACTCTTACATA
CGAAGTCACTTGACATAGAGATTCCAAAACATATTCCCGAAAGAGTGTCCCTAGTTGTAACAGAAACTGT
CGATGCAGGTTTATTTGGAGAAGGAATTGTGGAGAGTTTGATTCATGCATGGGAGCATTTACTTTTACAG
CCAAAGACCAAAGGTGAAAGTGCTAATTGTGAAAAGTATGGGAAAGTTATACCAGCAAGTGCTGTTATAT
TTGGGATGGCAGTAGAATGTGCAGAGATAAGAAGACATCATAGAGTGGGTATTAAGGACATTGCTGGTAT
CCATTTGCCAACAAATGTGAAATTTCAGAGTCCGGCTTATTCTTCTGTAGATACTGAAGAAACAATTGAA
CCTTATACAACTGAAAAGATGAGTCGAGTTCCTGGAGGATATTTGGCTTTGACAGAGTGCTTTGAAATTA
TGACAGTAGATTTCAACAACCTTCAGGAATTAAAAAGTCTTGCAACTAAAAAGCCTGATAAGATTGGTAT
TCCTGTTATTAAAGAAGGCATACTAGATGCTATTATGGTTTGGTTTGTGCTCCAGCTTGATGATGAACAT
AGTTTATCCACAAGTCCTAGTGAGGAAACATGTTGGGAACAGGCTGTCTACCCCGTACAGGACCTTGCAG
ACTACTGGATAAAGCCTGGAGACCATGTGATGATGGAAGTATCTTGTCAAGACTGTTACTTAAGAATCCA
GAGTATTAGTGTCTTGGGTTTGGAATGTGAAATGGATGTTGCAAAAAGTTTTACCCAGAATAAAGACTTG
TTATCGTTAGGAAATGAGGCTGAACTTTGTAGTGCCCTCGCTAACCTTCAGACCAGTAAACCAGATGCTG
TAGAGCAGACATGTATATTGGAATCTACAGAAATTGCTTTGCTTAACAACATCCCATATCATGAAGGCTT
TAAAATGGCAATGAGCAAAGTTTTGTCTTCACTGACTCCAGAGAAACTGTATCAGACCATGGATACTCAC
TGTCAGAATGAGATGAGCTCTGGAACTGGACAGAGTAATACTGTACAGAACATCCTTGAACCTTTCTACG
TGTTAGATGTGTCCGAAGGCTTCTCTGTTCTGCCTGTTATTGCTGGCACACTTGGGCAGGTTAAACCATA
CAGTTCTGTGGAGAAAGACCAGCATCGTATTGCTCTGGACCTCATATCTGAAGCCAATCACTTTCCTAAA
GAAACACTTGAGTTTTGGCTGAGACATGTGGAGGATGAATCTGCTATGTTACAAAGGCCAAAATCAGACA
AGTTATGGAGCATAATTATATTGGATGTCATTGAGCCATCTGGGCTCATTCAGCAGGAAATAATGGAAAA
AGCTGCAATATCCAGGTGTTTACTACAATCTGGAGGCAAGATCTTTCCTCAGTATGTGCTGATGTTTGGG
TTGCTTGTGGAATCACAGACACTCCTAGAGGAGAATGCTGTTCAAGGAACAGAACGTACTCTTGGATTAA
ATATAGCACCTTTTATTAACCAGTTTCAGGTACCTATACGTGTATTTTTGGACCTATCCTCATTGCCCTG
TATACCTTTAAGCAAGCCAGTGGAACTCTTAAGACTAGATTTAATGACTCCGTATTTGAACACCTCTAAC
AGAGAAGTAAAGGTATACGTTTGTAAATCTGGAAGACTGACTGCTATTCCATTTTGGTATCATATGTACC
TTGATGAAGAGATTAGGTTGGATACTTCAAGTGAAGCCTCCCACTGGAAACAAGCTGCAGTTGTTTTAGA
TAATCCCATCCAGGTTGAAATGGGAGAGGAACTTGTACTCAGCATTCAGCATCACAAAAGCAATGTCAGC
ATCACAGTAAAGCAATGA

Translation (845 aa):
MSNSRPRSRRDAGGGAGAAGRDELVSRSLQSAEHCLGVQDFGTAYAHYLLVLSLAPELKHDVKETFQYTL
FRWAEELDALSRIQDLLGCYEQALELFPDDEVICNSMGEHLFRMGFRDEAAGYFHKAVKLNPDFSDAKEN
FYRVANWLVERWHFIMLNDTKRNTIYNAAIQKAVCLGSKSVLDIGAGTGILSMFAKKAGAHSVYACELSK
TMYELACDVVAANKMEAGIKLLHTKSLDIEIPKHIPERVSLVVTETVDAGLFGEGIVESLIHAWEHLLLQ
PKTKGESANCEKYGKVIPASAVIFGMAVECAEIRRHHRVGIKDIAGIHLPTNVKFQSPAYSSVDTEETIE
PYTTEKMSRVPGGYLALTECFEIMTVDFNNLQELKSLATKKPDKIGIPVIKEGILDAIMVWFVLQLDDEH
SLSTSPSEETCWEQAVYPVQDLADYWIKPGDHVMMEVSCQDCYLRIQSISVLGLECEMDVAKSFTQNKDL
LSLGNEAELCSALANLQTSKPDAVEQTCILESTEIALLNNIPYHEGFKMAMSKVLSSLTPEKLYQTMDTH
CQNEMSSGTGQSNTVQNILEPFYVLDVSEGFSVLPVIAGTLGQVKPYSSVEKDQHRIALDLISEANHFPK
ETLEFWLRHVEDESAMLQRPKSDKLWSIIILDVIEPSGLIQQEIMEKAAISRCLLQSGGKIFPQYVLMFG
LLVESQTLLEENAVQGTERTLGLNIAPFINQFQVPIRVFLDLSSLPCIPLSKPVELLRLDLMTPYLNTSN
REVKVYVCKSGRLTAIPFWYHMYLDEEIRLDTSSEASHWKQAAVVLDNPIQVEMGEELVLSIQHHKSNVS
ITVKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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