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Report for CCDS14800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14800.1 Public Homo sapiens Y BPY2 24 110 108 CCDS HistoryNCBI Gene:9083Re-query CCDS DB by CCDS ID:14800.1See the combined annotation on chromosome Y in Sequence Viewer

Public Note for CCDS 14800.1
This CCDS ID represents the protein described in PMIDs: 12724276 and 12207887. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 12724276. Three identical copies of this gene exist on chromosome Y; two copies are part of a palindromic region. This record represents the copy outside of the palidromic region.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 14800.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331070.8 ENSP00000329106.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331070.8Link to Ensembl Protein Viewer:ENSP00000329106.3Re-query CCDS DB by Nucleotide ID:ENST00000331070Re-query CCDS DB by Protein ID:ENSP00000329106
Original member Current member EBI ENST00000382585.2 ENSP00000372028.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382585.2Link to Ensembl Protein Viewer:ENSP00000372028.1Re-query CCDS DB by Nucleotide ID:ENST00000382585Re-query CCDS DB by Protein ID:ENSP00000372028
Original member Current member NCBI NM_004678.3 NP_004669.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004678.3Link to Protein Sequence:NP_004669.2Re-query CCDS DB by Nucleotide ID:NM_004678Re-query CCDS DB by Protein ID:NP_004669Link to BLAST:NP_004669.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004669.2 106 O14599 106 100% 0 0

Chromosomal Locations for CCDS 14800.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 22992344 22992421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22994481 22994598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22997452 22997557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22998250 22998268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGATGACGCTTGTCCCCAGAGCCAGGACACGTGCAGGACAGGATCATTACTCTCATCCCTGCCCCAGAT
TTTCACAGGTGCTGCTTACAGAGGGCATCATGACATATTGCTTGACAAAGAACCTAAGTGATGTTAATAT
TCTGCATAGGTTGCTAAAAAATGGGAATGTGAGAAATACCTTGCTTCAGTCCAAAGTGGGCTTGCTGACA
TATTATGTGAAACTGTACCCGGGTGAAGTGACTCTTCTGACTAGGCCCAGCATACAAATGAGATTATGCT
GTATCACTGGCTCAGTGTCGAGGCCCAGATCACAGAAGTAA

Translation (106 aa):
MMTLVPRARTRAGQDHYSHPCPRFSQVLLTEGIMTYCLTKNLSDVNILHRLLKNGNVRNTLLQSKVGLLT
YYVKLYPGEVTLLTRPSIQMRLCCITGSVSRPRSQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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