NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8453.1 Public Homo sapiens 11 ESAM 24 110 108 CCDS HistoryNCBI Gene:90952Re-query CCDS DB by CCDS ID:8453.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278927.10 ENSP00000278927.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278927.10Link to Ensembl Protein Viewer:ENSP00000278927.5Re-query CCDS DB by Nucleotide ID:ENST00000278927Re-query CCDS DB by Protein ID:ENSP00000278927
Original member Current member NCBI NM_138961.3 NP_620411.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138961.3Link to Protein Sequence:NP_620411.2Re-query CCDS DB by Nucleotide ID:NM_138961Re-query CCDS DB by Protein ID:NP_620411Link to BLAST:NP_620411.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620411.2 390 Q96AP7-1 390 100% 0 0

Chromosomal Locations for CCDS 8453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124753646 124753961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124754214 124754340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124754641 124754763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124756207 124756362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124756541 124756742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124758349 124758527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 124762085 124762154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGATTTCCCTCCCGGGGCCCCTGGTGACCAACTTGCTGCGGTTTTTGTTCCTGGGGCTGAGTGCCCTCG
CG
CCCCCCTCGCGGGCCCAGCTGCAACTGCACTTGCCCGCCAACCGGTTGCAGGCGGTGGAGGGAGGGGA
A
GTGGTGCTTCCAGCGTGGTACACCTTGCACGGGGAGGTGTCTTCATCCCAGCCATGGGAGGTGCCCTTT
GTG
ATGTGGTTCTTCAAACAGAAAGAAAAGGAGGATCAGGTGTTGTCCTACATCAATGGGGTCACAACAA
GC
AAACCTGGAGTATCCTTGGTCTACTCCATGCCCTCCCGGAACCTGTCCCTGCGGCTGGAGGGTCTCCA
G
GAGAAAGACTCTGGCCCCTACAGCTGCTCCGTGAATGTGCAAGACAAACAAGGCAAATCTAGGGGCCAC
AGC
ATCAAAACCTTAGAACTCAATGTACTGGTTCCTCCAGCTCCTCCATCCTGCCGTCTCCAGGGTGTGC
CC
CATGTGGGGGCAAACGTGACCCTGAGCTGCCAGTCTCCAAGGAGTAAGCCCGCTGTCCAATACCAGTG
G
GATCGGCAGCTTCCATCCTTCCAGACTTTCTTTGCACCAGCATTAGATGTCATCCGTGGGTCTTTAAGC
CTC
ACCAACCTTTCGTCTTCCATGGCTGGAGTCTATGTCTGCAAGGCCCACAATGAGGTGGGCACTGCCC
AA
TGTAATGTGACGCTGGAAGTGAGCACAGGGCCTGGAGCTGCAGTGGTTGCTGGAGCTGTTGTGGGTAC
C
CTGGTTGGACTGGGGTTGCTGGCTGGGCTGGTCCTCTTGTACCACCGCCGGGGCAAGGCCCTGGAGGAG
CCA
GCCAATGATATCAAGGAGGATGCCATTGCTCCCCGGACCCTGCCCTGGCCCAAGAGCTCAGACACAA
TC
TCCAAGAATGGGACCCTTTCCTCTGTCACCTCCGCACGAGCCCTCCGGCCACCCCATGGCCCTCCCAG
G
CCTGGTGCATTGACCCCCACGCCCAGTCTCTCCAGCCAGGCCCTGCCCTCACCAAGACTGCCCACGACA
GAT
GGGGCCCACCCTCAACCAATATCCCCCATCCCTGGTGGGGTTTCTTCCTCTGGCTTGAGCCGCATGG
GT
GCTGTGCCTGTGATGGTGCCTGCCCAGAGTCAAGCTGGCTCTCTGGTATGA


Translation (390 aa):
MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGEVSSSQPWEVPF
V
MWFFKQKEKEDQ
VLSYINGVTTSKPGVSLVYSMPSRNLSLRLEGLQEKDSGPYSCSVNVQDKQGKSRGH
S
IKTLELNVL
VPPAPPSCRLQGVPHVGANVTLSCQSPRSKPAVQYQWDRQLPSFQTFFAPALDVIRGSLS
L
TNLSSSMAGVYVCKAHNEVGTAQCNVTLEVST
GPGAAVVAGAVVGTLVGLGLLAGLVLLYHRRGKALEE
P
ANDI
KEDAIAPRTLPWPKSSDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTT
D
GAHPQPISPIPGGVSSSGLSRMGAVPVMVPAQSQAGSLV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser