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Report for CCDS4436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4436.1 Public Homo sapiens 5 COL23A1 24 110 108 CCDS HistoryNCBI Gene:91522Re-query CCDS DB by CCDS ID:4436.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000390654.8 ENSP00000375069.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000390654.8Link to Ensembl Protein Viewer:ENSP00000375069.3Re-query CCDS DB by Nucleotide ID:ENST00000390654Re-query CCDS DB by Protein ID:ENSP00000375069
Original member Current member NCBI NM_173465.4 NP_775736.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173465.4Link to Protein Sequence:NP_775736.2Re-query CCDS DB by Nucleotide ID:NM_173465Re-query CCDS DB by Protein ID:NP_775736Link to BLAST:NP_775736.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775736.2 540 Q86Y22-1 540 100% 0 0

Chromosomal Locations for CCDS 4436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 178238698 178238700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178239141 178239179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178242042 178242128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178242341 178242394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178245942 178245968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178246254 178246307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178246391 178246453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178247526 178247552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178247775 178247831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178248192 178248254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178249117 178249206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178250061 178250105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178252544 178252597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178254949 178255026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178256353 178256397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178256866 178256928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178257523 178257567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178259721 178259747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178261722 178261748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178262217 178262252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178263208 178263324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178267307 178267333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178268730 178268756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178270337 178270363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178288324 178288350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178290362 178290369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178306875 178306919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178560682 178560748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178589904 178590197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGGCCCAGGCGAGCGCGCCGGTGGCGGCGGCGACGCGGGGAAGGGCAATGCGGCGGGCGGCGGCGGCG
GAGGGCGCTCGGCGACGACGGCCGGGTCCCGGGCGGTGAGCGCGCTGTGCCTGCTGCTCTCCGTGGGCTC
GGCGGCTGCCTGCCTGCTGCTGGGTGTCCAGGCGGCCGCGCTGCAGGGCCGGGTGGCGGCGCTCGAGGAG
GAGCGGGAGCTGCTGCGGCGCGCGGGGCCGCCAGGCGCCCTGGACGCCTGGGCCGAGCCGCACCTGGAGC
GCCTGCTGCGGGAGAAGTTGGACGGACTAGCGAAGATCCGGACTGCTCGGGAAGCTCCATCCGAATGTGT
CTGCCCCCCAGGGCCCCCTGGACGGCGCGGCAAGCCTGGGAGAAGAGGCGACCCTGGTCCTCCAGGGCAA
TCAGGACGAGATGGCTACCCGGGACCCCTGGGTTTGGATGGCAAGCCCGGACTTCCAGGCCCGAAAGGGG
AAAAGGGTGCACCAGGAGACTTTGGCCCCCGGGGAGACCAAGGACAAGATGGAGCTGCTGGGCCTCCGGG
GCCCCCTGGACCTCCTGGGGCCCGGGGCCCTCCTGGCGACACTGGGAAAGATGGCCCCAGGGGAGCACAA
GGCCCAGCGGGCCCCAAAGGAGAGCCCGGACAAGACGGCGAGATGGGCCCAAAGGGACCCCCAGGGCCCA
AGGGTGAGCCTGGAGTACCTGGAAAGAAGGGCGACGATGGGACACCAAGCCAGCCTGGACCACCAGGGCC
CAAGGGCGAGCCAGGGAGCATGGGGCCTCGGGGAGAGAACGGTGTGGACGGTGCCCCAGGACCGAAGGGG
GAGCCTGGCCACCGAGGCACGGATGGAGCTGCAGGGCCCCGGGGTGCCCCAGGCCTCAAGGGCGAGCAGG
GAGACACAGTGGTGATCGACTATGATGGCAGGATCTTGGATGCCCTCAAGGGGCCTCCCGGACCACAGGG
GCCCCCAGGGCCACCAGGGATCCCTGGAGCCAAGGGCGAGCTTGGATTGCCCGGTGCCCCAGGAATCGAT
GGAGAGAAGGGCCCCAAAGGACAGAAAGGAGACCCAGGAGAGCCTGGGCCAGCAGGACTCAAAGGGGAAG
CAGGCGAGATGGGCTTGTCCGGCCTCCCGGGCGCTGACGGCCTCAAGGGGGAGAAGGGGGAGTCGGCGTC
TGACAGCCTACAGGAGAGCCTGGCTCAGCTCATAGTGGAGCCAGGGCCCCCTGGCCCCCCTGGCCCCCCA
GGCCCGATGGGCCTCCAGGGAATCCAGGGTCCCAAGGGCTTGGATGGAGCAAAGGGAGAGAAGGGTGCGT
CGGGTGAGAGAGGCCCCAGCGGCCTGCCTGGGCCAGTTGGCCCACCGGGCCTTATTGGGCTGCCAGGAAC
CAAAGGAGAGAAGGGCAGACCCGGGGAGCCAGGACTAGATGGTTTCCCTGGACCCCGAGGAGAGAAAGGT
GATCGGAGCGAGCGTGGAGAGAAGGGAGAACGAGGGGTCCCCGGCCGGAAAGGAGTGAAGGGCCAGAAGG
GCGAGCCGGGACCACCAGGCCTGGACCAGCCGTGTCCCGTGGGCCCCGACGGGCTGCCTGTGCCTGGCTG
CTGGCATAAGTGA

Translation (540 aa):
MGPGERAGGGGDAGKGNAAGGGGGGRSATTAGSRAVSALCLLLSVGSAAACLLLGVQAAALQGRVAALEE
ERELLRRAGPPGALDAWAEPHLERLLREKLDGLAKIRTAREAPSECVCPPGPPGRRGKPGRRGDPGPPGQ
SGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQ
GPAGPKGEPGQDGEMGPKGPPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKG
EPGHRGTDGAAGPRGAPGLKGEQGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGAKGELGLPGAPGID
GEKGPKGQKGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESASDSLQESLAQLIVEPGPPGPPGPP
GPMGLQGIQGPKGLDGAKGEKGASGERGPSGLPGPVGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKG
DRSERGEKGERGVPGRKGVKGQKGEPGPPGLDQPCPVGPDGLPVPGCWHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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