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Report for CCDS32585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32585.1 Public Homo sapiens 17 ATPAF2 24 110 108 CCDS HistoryNCBI Gene:91647Re-query CCDS DB by CCDS ID:32585.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32585.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000474627.8 ENSP00000417190.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000474627.8Link to Ensembl Protein Viewer:ENSP00000417190.2Re-query CCDS DB by Nucleotide ID:ENST00000474627Re-query CCDS DB by Protein ID:ENSP00000417190
Original member Current member NCBI NM_145691.4 NP_663729.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145691.4Link to Protein Sequence:NP_663729.1Re-query CCDS DB by Nucleotide ID:NM_145691Re-query CCDS DB by Protein ID:NP_663729Link to BLAST:NP_663729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663729.1 289 Q8N5M1 289 100% 0 0

Chromosomal Locations for CCDS 32585.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18018549 18018686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18021123 18021238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18021745 18021857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18024624 18024704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18026319 18026416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18028232 18028377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18028615 18028659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18038881 18039013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGTGGAGGAGCTGCCTCCGGCTGCGGGACGGGGGACGCCGTCTCCTGAATCGGCCGGCGGGTGGCCCCA
GCGCTTCTATGAGTCCGGGGCCAACCATCCCGTCTCCAGCCCGGGCTTACGCCCCGCCGACAGAAAGGAA
GAGGTTTTATCAGAATGTCAGCATCACACAGGGTGAAGGTGGCTTTGAGATAAACCTGGACCACAGGAAG
CTGAAAACTCCCCAAGCCAAGCTCTTTACCGTCCCCAGCGAGGCCCTGGCCATTGCAGTGGCTACTGAGT
GGGATTCCCAGCAGGATACCATCAAGTACTACACCATGCACCTGACCACATTGTGCAACACATCATTGGA
CAACCCAACCCAGAGAAACAAGGATCAGCTGATCCGGGCAGCCGTGAAGTTTCTGGACACCGACACCATC
TGCTACAGGGTGGAGGAGCCCGAGACATTAGTGGAACTTCAAAGGAATGAGTGGGATCCAATCATCGAAT
GGGCTGAGAAAAGATACGGCGTGGAGATCAGCTCCTCCACCAGCATAATGGGACCCAGCATCCCTGCCAA
AACTCGGGAGGTGCTCGTCAGCCACCTGGCATCTTACAACACATGGGCTTTACAAGGGATTGAGTTTGTA
GCTGCCCAGCTCAAGTCCATGGTGCTAACCTTGGGCCTGATTGACCTGCGCCTGACAGTGGAGCAGGCCG
TGCTGCTGTCACGCCTGGAGGAGGAGTACCAGATCCAGAAGTGGGGCAACATTGAGTGGGCCCATGACTA
TGAGCTGCAGGAGCTGCGGGCCCGCACCGCCGCCGGCACCCTCTTCATCCATCTCTGCTCCGAGAGCACC
ACAGTCAAGCACAAGCTCCTGAAGGAGTGA

Translation (289 aa):
MWRSCLRLRDGGRRLLNRPAGGPSASMSPGPTIPSPARAYAPPTERKRFYQNVSITQGEGGFEINLDHRK
LKTPQAKLFTVPSEALAIAVATEWDSQQDTIKYYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTI
CYRVEEPETLVELQRNEWDPIIEWAEKRYGVEISSSTSIMGPSIPAKTREVLVSHLASYNTWALQGIEFV
AAQLKSMVLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHLCSEST
TVKHKLLKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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