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Report for CCDS8748.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8748.2 Public Homo sapiens 12 SCAF11 24 110 108 CCDS HistoryNCBI Gene:9169Re-query CCDS DB by CCDS ID:8748.2See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8748.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369367.8 ENSP00000358374.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369367.8Link to Ensembl Protein Viewer:ENSP00000358374.3Re-query CCDS DB by Nucleotide ID:ENST00000369367Re-query CCDS DB by Protein ID:ENSP00000358374
Original member Current member NCBI NM_004719.3 NP_004710.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004719.3Link to Protein Sequence:NP_004710.2Re-query CCDS DB by Nucleotide ID:NM_004719Re-query CCDS DB by Protein ID:NP_004710Link to BLAST:NP_004710.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004710.2 1463 Q99590-1 1463 100% 0 0

Chromosomal Locations for CCDS 8748.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 45922048 45922194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45922463 45922582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45922936 45923154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45924728 45925074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45926142 45928859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45931506 45931612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45933131 45933232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45934176 45934285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45934447 45934505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45945249 45945313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45948437 45948537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45951650 45951727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45961700 45961857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 45964107 45964167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4392 nt):
ATGAAGAAGAAAACTGTATGTACCCTAAATATGGGAGATAAGAAGTATGAAGACATGGAAGGTGAAGAAA
ACGGAGATAATACTATTTCCACTGGTCTGTTGTACAGTGAGGCTGACAGATGCCCAATATGTCTTAATTG
TCTATTAGAAAAGGAAGTTGGTTTTCCAGAAAGCTGTAATCATGTCTTCTGTATGACTTGTATTCTTAAA
TGGGCAGAGACACTGGCTTCATGTCCTATTGACCGTAAACCTTTTCAGGCAGTGTTTAAATTCAGTGCAT
TGGAAGGTTATGTTAAGGTTCAAGTAAAAAAACAGCTGAGAGAAACAAAAGACAAGAAAAATGAAAACTC
ATTTGAGAAACAGGTCTCCTGTCATGAAAATTCTAAAAGCTGTATAAGAAGAAAAGCCATCGTAAGAGAA
GATCTATTAAGTGCAAAAGTTTGTGACTTGAAGTGGATACATAGAAACTCTTTATACAGTGAAACAGGAG
GAAAGAAAAATGCAGCAATAAAGATAAATAAGCCTCAGAGATCAAATTGGAGTACAAATCAGTGCTTCAG
AAATTTTTTCTCCAATATGTTTTCTTCTGTTAGCCACTCTGGAGAATCTTCCTTTACCTATAGAGCTTAT
TGTACAGAATTTATAGAAGCCAGTGAAATCAGTGCATTGATTAGGCAGAAGAGACATGAACTGGAATTGT
CATGGTTTCCTGATACATTACCTGGAATTGGAAGAATTGGTTTTATACCCTGGAATGTTGAAACAGAAGT
CCTTCCTCTCATTTCTTCTGTGTTGCCAAGAACTATTTTTCCAACAAGTACCATATCTTTCGAACATTTT
GGTACTTCTTGCAAGGGATATGCATTAGCACATACTCAAGAAGGGGAAGAAAAGAAGCAAACTTCTGGTA
CATCAAATACCAGAGGATCAAGACGAAAACCTGCAATGACAACTCCTACAAGGAGGTCTACACGTAACAC
AAGAGCTGAAACAGCCAGTCAGTCTCAGAGATCCCCAATATCAGACAATTCTGGGTGTGATGCCCCAGGT
AACAGTAATCCATCTTTAAGTGTTCCCTCTTCAGCTGAGTCAGAAAAGCAAACAAGACAGGCTCCAAAAC
GGAAGTCTGTAAGAAGAGGAAGAAAACCACCTTTACTGAAAAAGAAACTTCGGAGCTCTGTAGCTGCCCC
TGAAAAATCATCTTCCAATGATTCAGTAGATGAAGAAACAGCAGAATCTGACACATCACCTGTGTTAGAA
AAAGAGCACCAACCAGATGTAGACAGTAGTAACATTTGTACTGTGCAGACTCATGTAGAAAACCAGTCTG
CTAATTGCTTGAAAAGTTGCAATGAGCAAATAGAAGAAAGTGAGAAGCATACTGCAAATTATGATACAGA
GGAAAGAGTAGGATCTTCATCTTCTGAGTCTTGTGCTCAAGATCTTCCTGTGCTAGTTGGTGAGGAAGGG
GAAGTTAAAAAACTCGAGAATACAGGTATAGAGGCTAATGTTTTGTGTTTGGAAAGTGAGATTTCTGAAA
ATATTCTTGAAAAAGGAGGTGATCCATTGGAAAAGCAAGACCAGATATCTGGACTTTCACAATCAGAGGT
AAAGACAGATGTATGTACAGTTCATCTTCCAAATGATTTTCCTACATGTTTAACATCTGAAAGCAAAGTG
TACCAACCTGTATCTTGTCCCCTAAGTGACTTATCTGAGAATGTAGAGTCAGTGGTTAATGAAGAAAAAA
TAACAGAGAGTTCCCTAGTAGAAATTACTGAACATAAAGATTTTACACTAAAAACAGAGGAGCTTATAGA
GAGCCCCAAGTTAGAATCTTCTGAGGGTGAAATTATACAGACAGTGGACAGACAATCTGTTAAGAGCCCA
GAGGTTCAATTGCTTGGGCATGTTGAAACTGAAGATGTAGAAATAATTGCAACATGTGATACTTTTGGGA
ATGAAGATTTCAATAATATTCAAGACTCTGAAAATAACTTACTAAAAAATAATCTTCTGAACACCAAATT
GGAAAAATCTTTAGAAGAAAAGAATGAATCGCTGACCGAACATCCTAGATCTACAGAGTTGCCTAAAACA
CACATTGAACAGATTCAGAAGCATTTTAGTGAGGACAACAATGAAATGATACCTATGGAGTGTGATTCAT
TTTGCAGTGACCAAAATGAATCTGAAGTTGAACCATCTGTAAATGCTGATCTTAAACAAATGAATGAAAA
TTCTGTGACACACTGTTCTGAAAATAATATGCCGTCTTCTGATCTTGCGGATGAAAAGGTTGAAACTGTT
TCTCAACCATCTGAAAGCCCAAAAGATACCATAGATAAAACCAAAAAGCCTCGTACTCGAAGATCTAGAT
TTCATTCTCCATCTACAACTTGGTCACCCAACAAAGACACTCCACAAGAAAAGAAGCGGCCCCAGTCTCC
ATCTCCCAGAAGAGAAACTGGGAAAGAAAGCAGGAAGTCTCAATCACCATCTCCTAAGAATGAGTCAGCC
AGAGGCCGGAAAAAATCCCGTTCTCAGTCCCCAAAAAAGGATATTGCAAGAGAAAGGAGGCAATCTCAGT
CTCGGTCTCCAAAAAGGGATACTACTAGGGAAAGCAGAAGATCTGAATCACTGTCCCCAAGAAGAGAAAC
TTCTAGAGAGAACAAAAGATCTCAGCCAAGAGTGAAAGATTCTTCCCCAGGAGAAAAATCCAGGTCCCAG
AGCAGAGAACGAGAAAGTGATAGAGATGGGCAGAGGAGAGAGAGAGAAAGGAGAACCAGAAAGTGGTCTA
GGTCCAGATCTCATTCTAGGTCCCCCTCAAGATGTAGAACAAAAAGTAAGAGTTCATCATTTGGTAGAAT
TGACAGAGATAGTTACTCTCCCCGGTGGAAGGGAAGATGGGCAAATGATGGTTGGAGATGTCCACGAGGA
AATGATCGGTACAGAAAGAATGACCCAGAGAAACAGAATGAAAATACAAGAAAAGAAAAAAATGACATCC
ATCTAGATGCTGATGATCCAAATTCTGCTGACAAACATAGAAATGACTGTCCCAATTGGATAACAGAAAA
AATAAACTCTGGGCCTGATCCAAGAACCAGAAATCCAGAAAAGTTGAAAGAGTCTCATTGGGAAGAAAAT
AGAAATGAAAATTCAGGAAATTCTTGGAATAAAAACTTTGGTTCTGGTTGGGTATCTAACCGTGGTAGAG
GCAGAGGCAACCGTGGCAGAGGCACTTACAGAAGTAGTTTTGCCTATAAAGATCAGAATGAAAATCGGTG
GCAAAATCGAAAACCCCTCTCAGGGAATTCAAACAGTTCAGGGAGTGAATCTTTCAAGTTTGTGGAACAG
CAATCCTATAAGCGAAAAAGTGAACAGGAGTTCTCATTTGATACACCAGCAGATAGATCTGGATGGACAT
CTGCATCCAGCTGGGCCGTGAGAAAGACTTTGCCAGCAGATGTACAAAACTACTACTCACGACGAGGCAG
AAATTCTTCAGGTCCACAGTCTGGATGGATGAAACAAGAGGAGGAAACATCTGGACAGGATTCTAGCCTA
AAAGACCAAACAAACCAGCAAGTTGATGGTTCTCAGCTACCTATAAATATGATGCAACCGCAAATGAATG
TAATGCAGCAACAAATGAATGCACAACACCAGCCTATGAATATCTTCCCATATCCAGTGGGTGTTCATGC
TCCTTTGATGAACATCCAACGCAATCCATTTAACATTCATCCTCAGCTACCCTTGCATCTCCACACAGGA
GTGCCCCTCATGCAGGTAGCCACTCCTACCAGTGTATCTCAGGGACTACCACCACCACCACCCCCTCCCC
CACCATCCCAACAAGTCAACTACATTGCTTCACAACCAGATGGAAAGCAATTGCAGGGTATTCCTAGTTC
TTCTCATGTAAGTAATAACATGAGTACACCAGTTTTGCCTGCTCCGACAGCAGCCCCAGGAAATACGGGA
ATGGTTCAGGGACCAAGTTCTGGTAATACTTCGTCATCAAGTCACAGCAAAGCCTCTAATGCTGCTGTAA
AATTGGCAGAAAGCAAAGTAAGTGTTGCAGTGGAAGCCAGCGCAGATAGCTCGAAGACAGACAAGAAATT
GCAAATTCAAGAAAAAGCAGCACAAGAGGTAAAATTGGCCATCAAGCCATTTTACCAAAATAAAGATATC
ACCAAGGAAGAATATAAAGAAATTGTACGGAAAGCAGTAGATAAAGTTTGTCATAGTAAGAGTGGAGAAG
TAAATTCTACTAAAGTGGCAAATCTGGTTAAAGCCTATGTAGACAAATACAAATATTCACGGAAGGGGAG
CCAAAAGAAAACTCTGGAAGAACCTGTGTCTACTGAAAAAAACATAGGCTGA

Translation (1463 aa):
MKKKTVCTLNMGDKKYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILK
WAETLASCPIDRKPFQAVFKFSALEGYVKVQVKKQLRETKDKKNENSFEKQVSCHENSKSCIRRKAIVRE
DLLSAKVCDLKWIHRNSLYSETGGKKNAAIKINKPQRSNWSTNQCFRNFFSNMFSSVSHSGESSFTYRAY
CTEFIEASEISALIRQKRHELELSWFPDTLPGIGRIGFIPWNVETEVLPLISSVLPRTIFPTSTISFEHF
GTSCKGYALAHTQEGEEKKQTSGTSNTRGSRRKPAMTTPTRRSTRNTRAETASQSQRSPISDNSGCDAPG
NSNPSLSVPSSAESEKQTRQAPKRKSVRRGRKPPLLKKKLRSSVAAPEKSSSNDSVDEETAESDTSPVLE
KEHQPDVDSSNICTVQTHVENQSANCLKSCNEQIEESEKHTANYDTEERVGSSSSESCAQDLPVLVGEEG
EVKKLENTGIEANVLCLESEISENILEKGGDPLEKQDQISGLSQSEVKTDVCTVHLPNDFPTCLTSESKV
YQPVSCPLSDLSENVESVVNEEKITESSLVEITEHKDFTLKTEELIESPKLESSEGEIIQTVDRQSVKSP
EVQLLGHVETEDVEIIATCDTFGNEDFNNIQDSENNLLKNNLLNTKLEKSLEEKNESLTEHPRSTELPKT
HIEQIQKHFSEDNNEMIPMECDSFCSDQNESEVEPSVNADLKQMNENSVTHCSENNMPSSDLADEKVETV
SQPSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESA
RGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQ
SRERESDRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSSFGRIDRDSYSPRWKGRWANDGWRCPRG
NDRYRKNDPEKQNENTRKEKNDIHLDADDPNSADKHRNDCPNWITEKINSGPDPRTRNPEKLKESHWEEN
RNENSGNSWNKNFGSGWVSNRGRGRGNRGRGTYRSSFAYKDQNENRWQNRKPLSGNSNSSGSESFKFVEQ
QSYKRKSEQEFSFDTPADRSGWTSASSWAVRKTLPADVQNYYSRRGRNSSGPQSGWMKQEEETSGQDSSL
KDQTNQQVDGSQLPINMMQPQMNVMQQQMNAQHQPMNIFPYPVGVHAPLMNIQRNPFNIHPQLPLHLHTG
VPLMQVATPTSVSQGLPPPPPPPPPSQQVNYIASQPDGKQLQGIPSSSHVSNNMSTPVLPAPTAAPGNTG
MVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVEASADSSKTDKKLQIQEKAAQEVKLAIKPFYQNKDI
TKEEYKEIVRKAVDKVCHSKSGEVNSTKVANLVKAYVDKYKYSRKGSQKKTLEEPVSTEKNIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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