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Report for CCDS3789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3789.1 Public Homo sapiens 4 LRAT 24 110 108 CCDS HistoryNCBI Gene:9227Re-query CCDS DB by CCDS ID:3789.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336356.4 ENSP00000337224.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336356.4Link to Ensembl Protein Viewer:ENSP00000337224.3Re-query CCDS DB by Nucleotide ID:ENST00000336356Re-query CCDS DB by Protein ID:ENSP00000337224
Original member Current member EBI ENST00000507827.5 ENSP00000426761.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507827.5Link to Ensembl Protein Viewer:ENSP00000426761.1Re-query CCDS DB by Nucleotide ID:ENST00000507827Re-query CCDS DB by Protein ID:ENSP00000426761
Original member Current member NCBI NM_001301645.2 NP_001288574.1 Accepted alive Link to Nucleotide Sequence:NM_001301645.2Link to Protein Sequence:NP_001288574.1Re-query CCDS DB by Nucleotide ID:NM_001301645Re-query CCDS DB by Protein ID:NP_001288574Link to BLAST:NP_001288574.1
Original member Current member NCBI NM_004744.5 NP_004735.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004744.5Link to Protein Sequence:NP_004735.2Re-query CCDS DB by Nucleotide ID:NM_004744Re-query CCDS DB by Protein ID:NP_004735Link to BLAST:NP_004735.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288574.1 230 O95237 230 100% 0 0
NP_004735.2 230 O95237 230 100% 0 0

Chromosomal Locations for CCDS 3789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154744327 154744866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154748984 154749136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGAAGAACCCCATGCTGGAGGTGGTGTCTTTACTACTGGAGAAGCTGCTCCTCATCTCCAACTTCACGC
TCTTTAGTTCGGGCGCCGCGGGCGAAGACAAAGGGAGGAACAGTTTTTATGAAACCAGCTCTTTCCACCG
AGGCGACGTGCTGGAGGTGCCCCGGACCCACCTGACCCACTATGGCATCTACCTAGGAGACAACCGTGTT
GCCCACATGATGCCCGACATCCTGTTGGCCCTGACAGACGACATGGGGCGCACGCAGAAGGTGGTCTCCA
ACAAGCGTCTCATCCTGGGCGTTATTGTCAAAGTGGCCAGCATCCGCGTGGACACAGTGGAGGACTTCGC
CTACGGAGCTAACATCCTGGTCAATCACCTGGACGAGTCCCTCCAGAAAAAGGCACTGCTCAACGAGGAG
GTGGCGCGGAGGGCTGAAAAGCTGCTGGGCTTTACCCCCTACAGCCTGCTGTGGAACAACTGCGAGCACT
TCGTGACCTACTGCAGATATGGCACCCCGATCAGTCCCCAGTCCGACAAGTTTTGTGAGACTGTGAAGAT
AATTATTCGTGATCAGAGAAGTGTTCTTGCTTCAGCAGTCTTGGGATTGGCGTCTATAGTCTGTACGGGC
TTGGTATCATACACTACCCTTCCTGCAATTTTTATTCCATTCTTCCTATGGATGGCTGGCTAA

Translation (230 aa):
MKNPMLEVVSLLLEKLLLISNFTLFSSGAAGEDKGRNSFYETSSFHRGDVLEVPRTHLTHYGIYLGDNRV
AHMMPDILLALTDDMGRTQKVVSNKRLILGVIVKVASIRVDTVEDFAYGANILVNHLDESLQKKALLNEE
VARRAEKLLGFTPYSLLWNNCEHFVTYCRYGTPISPQSDKFCETVKIIIRDQRSVLASAVLGLASIVCTG
LVSYTTLPAIFIPFFLWMAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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