NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30295.1 Public Mus musculus X Ophn1 23 108 98 CCDS HistoryNCBI Gene:94190Re-query CCDS DB by CCDS ID:30295.1Re-query CCDS DB by GeneID:94190See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033560.8 ENSMUSP00000033560.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033560.8Link to Ensembl Protein Viewer:ENSMUSP00000033560.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033560Re-query CCDS DB by Protein ID:ENSMUSP00000033560
Original member Current member EBI ENSMUST00000113826.7 ENSMUSP00000109457.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113826.7Link to Ensembl Protein Viewer:ENSMUSP00000109457.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113826Re-query CCDS DB by Protein ID:ENSMUSP00000109457
Original member Current member NCBI NM_001313754.1 NP_001300683.1 Accepted alive Link to Nucleotide Sequence:NM_001313754.1Link to Protein Sequence:NP_001300683.1Re-query CCDS DB by Nucleotide ID:NM_001313754Re-query CCDS DB by Protein ID:NP_001300683Link to BLAST:NP_001300683.1
Original member Current member NCBI NM_052976.4 NP_443208.1 Accepted alive Link to Nucleotide Sequence:NM_052976.4Link to Protein Sequence:NP_443208.1Re-query CCDS DB by Nucleotide ID:NM_052976Re-query CCDS DB by Protein ID:NP_443208Link to BLAST:NP_443208.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300683.1 802 Q99J31 802 100% 0 0
NP_443208.1 802 Q99J31 802 100% 0 0

Chromosomal Locations for CCDS 30295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 98559594 98559627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98563630 98563680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98564716 98564881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98578384 98578707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98597028 98597175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98626914 98627073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98640908 98641013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98641751 98641809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98644910 98644994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98695999 98696073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98698287 98698349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98698856 98698889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98701865 98701943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98705030 98705121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98710078 98710178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98712341 98712470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98714107 98714211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98726005 98726115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98732365 98732466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98763705 98763776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98780956 98781017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98803085 98803180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 98890082 98890235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGGGGCATCCCCCGCTGGAGTTCAGCGACTGCTACCTCGACAGCCCCGATTTCCGCCAGAGGCTCAAGT
ATTATGAAGAGGAGCTGGAGAGGACCAATAAATTCATCAAAGACGTGATCAAAGACGGCAGCGCGCTTAT
CAGCGCTATGAGAAATTACTCTTCTGCGGTTCAGAAATTTTCTCAGACACTCCAGTCATTTCAATTTGAT
TTCATTGGAGACACGCTGACCGATGATGAGATTAATATAGCGGAATCATTCAAGGAATTTGCTGAATTGC
TCAATGAAGTAGAAAATGAAAGGATGATGATGGTACAAAATGCTAGTGACTTGCTGATCAAACCCCTGGA
AACTTTTCGGAAGGAACAAATAGGTTTTACAAAGGAAAGGAAGAAGAAATTTGAAAAGGATGGTGAGAGG
TTTTACTCGCTACTGGACCGCCACTTACATCTGTCATCCAAAAAGAAAGAATCTCAGCTACTAGAGGCAG
ACCTCCAAGTGGATAAGGAAAGGCACAATTTCTTTGAATCATCTCTTGACTATGTTTATCAAATTCAGGA
AGTCCAGGAGTCAAAGAAGTTCAATATTGTGGAGCCGGTCTTGGCCTTCCTTCATAGCCTCTTCATTTCT
AACAGCTTGACTGTGGAGCTCACACAGGATTTCCTGCCATACAAACAACAGCTGCAGCTCAGCTTACAGA
ATACAAGAAATCATTTCTCCAGTACCCGGGAGGAGATGGAAGAACTTAAGAAAAGGATGAAAGAAGCCCC
TCAGACATGCAAACTTCCAGGACAGCCAACCATTGAAGGCTATCTCTACACACAGGAGAAATGGGCCCTG
GGGATATCCTGGGCGAAATACTATTGTCGGTATGAGAAAGAGACCAGGATGCTCACAATGATACCAATGG
AACAGAAGCCAGGTGCTAAGCAGGGACCGGTGGACTTAACTTTGAAGTACTGCGTGAGAAGGAAGACAGA
GTCAATTGACAAGAGATTCTGTTTTGATATAGAAACTAATGAAAGACCTGGAACCATCACTCTGCAGGCG
CCTTCCGAAGCCAATAGAAGGCTATGGATGGAAGCCATGGATGGCAAAGAACCTATCTACCACACTCCTA
TAACAAAACAGGAAGAAATGGAGCTGAATGAAGTGGGGTTCAAATTTGTTAGGAAGTGCATCAATTTTAT
TGAGACCAAAGGGATCAAGACAGAAGGGCTGTACCGCACCGTGGGCAGCAACATCCAGGTTCAGAAGCTG
CTCTATGCCTTTTTTGATCCAAAATGTCCAGGGGATGTTGATTTCCATAACAGTGACTGGGACATTAAGA
CAATCACAAGCTCTTTAAAATTCTACCTCAGGAATCTCTCAGAACCTGTCATGACTTATAAGCTCCATAA
AGAACTCGTCTCTGCTGCCAAATCTGACAACCTGGATTACCGTCTGGGGGCTATTCACTCCCTAGTATAT
AAGCTACCAGAAAAGAACCGGGAGATGCTGGAACTTCTAATCAAACACTTGGTAAATGTGTGTGAGCACA
GCAAAGAGAATCTTATGACACCTTCCAATATGGGGGTGATCTTTGGGCCCACCCTGATGAGAGCTCAAGA
GGACACTGTGGCTGCTATGATGAACATCAAATTCCAGAACATTGTGGTAGAAATCCTGATTGAACACTTT
GGCAAGATTTATTTAGGTCCACCCGAAGATAGCCAAGTACCTCCAGTGCCTCCACCTCGAGTGACAGCAA
GAAGACACAAACCAATCACAATCTCAAAGCGCTTGCTGAGAGAAAAGACTGTGTTCTATACTTCTTCCCT
GGATGAAAATAAAGATGAAAGTCACCATCAAACTCCTAATGGTACAATCACTAGCAACCTGGATCCCCCC
AAGCTACTGCAGCACCTCAAACCACCCATGCAAAAAAGTGGGGAAACTGACCCTGGAAGAAAGTCCCCAA
GCAGACCTGTTTCTGACTGTCAATCGGAGCCCTGCCTAGAGACGGATGTGGGGAGGTTGTTATTTAGGTT
GCAGGATGGAGGGACCAAGGCTACTCCAAAGGCTTCCAATGGACCTGTTCCAGGCTCTGGACACACAAAG
ACCTCCTCTTTCCATATAAGGAGACCAGCTCCCAGGCCAATGGCTCACCACAAGGAAGGCGATACTGACG
GTTTCAGCAAAGTCCGGCCCCCAGGAGAAAAGCAAACAATCATCCGTCCTCCGGTGAGGCCCCCAGACCC
TCCTTGCCGGTCCATCACTCCACAAAAGCCAGAGCCAAAGCCAGAAACAGGGTCTGGCAATGCAGACGAA
ATCCCATCATCCGTGGTGGCATCTAGGACCAGATTCTTTGAAACAGCTTCCCGGAAAACTGGAAGTTCTC
AAGGAAAACTTCCTGGAGATGAGAGTTGA

Translation (802 aa):
MGHPPLEFSDCYLDSPDFRQRLKYYEEELERTNKFIKDVIKDGSALISAMRNYSSAVQKFSQTLQSFQFD
FIGDTLTDDEINIAESFKEFAELLNEVENERMMMVQNASDLLIKPLETFRKEQIGFTKERKKKFEKDGER
FYSLLDRHLHLSSKKKESQLLEADLQVDKERHNFFESSLDYVYQIQEVQESKKFNIVEPVLAFLHSLFIS
NSLTVELTQDFLPYKQQLQLSLQNTRNHFSSTREEMEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWAL
GISWAKYYCRYEKETRMLTMIPMEQKPGAKQGPVDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQA
PSEANRRLWMEAMDGKEPIYHTPITKQEEMELNEVGFKFVRKCINFIETKGIKTEGLYRTVGSNIQVQKL
LYAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYKLHKELVSAAKSDNLDYRLGAIHSLVY
KLPEKNREMLELLIKHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHF
GKIYLGPPEDSQVPPVPPPRVTARRHKPITISKRLLREKTVFYTSSLDENKDESHHQTPNGTITSNLDPP
KLLQHLKPPMQKSGETDPGRKSPSRPVSDCQSEPCLETDVGRLLFRLQDGGTKATPKASNGPVPGSGHTK
TSSFHIRRPAPRPMAHHKEGDTDGFSKVRPPGEKQTIIRPPVRPPDPPCRSITPQKPEPKPETGSGNADE
IPSSVVASRTRFFETASRKTGSSQGKLPGDES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH