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Report for CCDS12560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12560.1 Public Homo sapiens 19 SHKBP1 24 110 108 CCDS HistoryNCBI Gene:92799Re-query CCDS DB by CCDS ID:12560.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12560.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291842.10 ENSP00000291842.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291842.10Link to Ensembl Protein Viewer:ENSP00000291842.4Re-query CCDS DB by Nucleotide ID:ENST00000291842Re-query CCDS DB by Protein ID:ENSP00000291842
Original member Current member NCBI NM_138392.4 NP_612401.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138392.4Link to Protein Sequence:NP_612401.2Re-query CCDS DB by Nucleotide ID:NM_138392Re-query CCDS DB by Protein ID:NP_612401Link to BLAST:NP_612401.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612401.2 707 Q8TBC3-1 707 100% 0 0

Chromosomal Locations for CCDS 12560.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40576900 40576985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40577231 40577284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40577396 40577441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40577557 40577630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40578154 40578212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40578462 40578542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40580324 40580485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40580566 40580656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40580746 40580936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40582351 40582466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40583398 40583485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40583601 40583717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40586774 40586944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40588624 40588779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40589082 40589178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40590244 40590422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40590730 40590853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40590976 40591207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGGCAGCAGCGGCTACTGCAGCCGAGGGGGTCCCCAGTCGGGGGCCTCCCGGGGAAGTCATTCATCTGA
ATGTGGGAGGCAAGAGATTCAGTACCTCTCGCCAGACTCTCACCTGGATCCCAGACTCCTTCTTCTCCAG
TCTTCTGAGCGGACGCATCTCGACGCTGAAAGATGAGACCGGAGCAATCTTCATCGACAGGGACCCTACA
GTCTTCGCCCCCATCCTCAACTTCCTGCGCACCAAAGAGTTGGATCCCAGGGGTGTCCACGGTTCCAGCC
TCCTCCATGAAGCCCAGTTCTATGGGCTCACTCCTCTGGTTCGTCGCCTGCAGCTTCGAGAGGAGTTGGA
TCGATCTTCTTGTGGAAACGTCCTCTTCAATGGTTACCTGCCGCCACCAGTGTTCCCAGTGAAGCGGCGG
AACCGGCACAGCCTAGTGGGGCCTCAGCAGCTAGGAGGACGGCCAGCCCCTGTCCGACGGAGCAACACGA
TGCCCCCCAACCTTGGCAATGCAGGGCTGCTGGGCCGAATGCTGGATGAGAAAACCCCTCCCTCACCCTC
AGGACAACCTGAGGAGCCGGGGATGGTGCGCCTGGTGTGTGGACACCATAATTGGATCGCTGTGGCCTAT
ACCCAGTTTCTAGTCTGCTACAGGTTGAAGGAAGCCTCTGGCTGGCAGCTGGTGTTTTCCAGCCCCCGCC
TGGACTGGCCCATCGAACGACTGGCGCTCACAGCCCGGGTGCATGGTGGGGCTTTGGGTGAACATGACAA
GATGGTGGCAGCAGCCACCGGCAGCGAGATCCTGCTATGGGCTCTGCAGGCGGAAGGCGGTGGCTCCGAG
ATAGGGGTCTTTCATCTGGGGGTGCCTGTGGAGGCCTTGTTCTTCGTCGGGAACCAGCTCATTGCTACAA
GCCACACAGGGCGCATCGGGGTGTGGAATGCCGTCACCAAGCACTGGCAGGTCCAGGAGGTGCAGCCCAT
CACCAGTTATGACGCGGCAGGCTCCTTCCTCCTCCTGGGCTGCAACAACGGCTCCATTTACTACGTGGAT
GTGCAGAAGTTCCCCTTGCGCATGAAAGACAACGACCTCCTTGTCAGCGAGCTCTATCGGGACCCAGCGG
AGGATGGGGTCACCGCCCTCAGTGTCTACCTCACCCCCAAGACCAGTGACAGTGGGAACTGGATCGAGAT
CGCCTATGGCACCAGCTCAGGGGGCGTGCGGGTCATCGTGCAGCACCCGGAGACTGTGGGCTCGGGGCCT
CAGCTCTTCCAGACCTTCACTGTGCACCGCAGCCCTGTCACCAAGATCATGCTGTCGGAGAAGCACCTCA
TCTCAGTCTGTGCCGACAACAACCACGTGCGGACATGGTCTGTGACTCGCTTCCGCGGCATGATTTCCAC
CCAGCCCGGCTCCACCCCACTCGCTTCCTTTAAGATCCTGGCTCTGGAGTCGGCAGATGGGCATGGCGGC
TGCAGTGCTGGCAATGACATTGGCCCCTACGGTGAGCGGGACGACCAGCAAGTGTTCATCCAGAAGGTGG
TGCCCAGTGCCAGCCAGCTCTTCGTGCGTCTCTCATCTACTGGGCAGCGGGTGTGCTCCGTGCGCTCCGT
GGACGGCTCACCCACGACAGCCTTCACAGTGCTGGAGTGCGAGGGCTCCCGGCGGCTCGGCTCTCGGCCC
CGGCGCTACCTGCTCACTGGCCAGGCCAACGGCAGCTTGGCCATGTGGGACCTAACCACCGCCATGGACG
GCCTCGGCCAGGCCCCTGCAGGTGGCCTGACGGAGCAAGAGCTGATGGAACAGCTGGAACACTGTGAGCT
GGCCCCGCCGGCTCCTTCAGCTCCCTCATGGGGCTGTCTCCCCAGCCCCTCACCCCGCATCTCCCTCACC
AGCCTCCACTCAGCCTCCAGCAACACCTCCTTGTCTGGCCACCGTGGGAGCCCAAGCCCCCCGCAGGCTG
AGGCCCGGCGCCGTGGTGGGGGCAGCTTTGTGGAACGCTGCCAGGAACTGGTGCGGAGTGGGCCAGACCT
CCGACGGCCACCCACACCAGCCCCGTGGCCCTCCAGCGGTCTCGGCACTCCCCTCACACCTCCCAAGATG
AAGCTCAATGAAACTTCCTTTTGA

Translation (707 aa):
MAAAATAAEGVPSRGPPGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSGRISTLKDETGAIFIDRDPT
VFAPILNFLRTKELDPRGVHGSSLLHEAQFYGLTPLVRRLQLREELDRSSCGNVLFNGYLPPPVFPVKRR
NRHSLVGPQQLGGRPAPVRRSNTMPPNLGNAGLLGRMLDEKTPPSPSGQPEEPGMVRLVCGHHNWIAVAY
TQFLVCYRLKEASGWQLVFSSPRLDWPIERLALTARVHGGALGEHDKMVAAATGSEILLWALQAEGGGSE
IGVFHLGVPVEALFFVGNQLIATSHTGRIGVWNAVTKHWQVQEVQPITSYDAAGSFLLLGCNNGSIYYVD
VQKFPLRMKDNDLLVSELYRDPAEDGVTALSVYLTPKTSDSGNWIEIAYGTSSGGVRVIVQHPETVGSGP
QLFQTFTVHRSPVTKIMLSEKHLISVCADNNHVRTWSVTRFRGMISTQPGSTPLASFKILALESADGHGG
CSAGNDIGPYGERDDQQVFIQKVVPSASQLFVRLSSTGQRVCSVRSVDGSPTTAFTVLECEGSRRLGSRP
RRYLLTGQANGSLAMWDLTTAMDGLGQAPAGGLTEQELMEQLEHCELAPPAPSAPSWGCLPSPSPRISLT
SLHSASSNTSLSGHRGSPSPPQAEARRRGGGSFVERCQELVRSGPDLRRPPTPAPWPSSGLGTPLTPPKM
KLNETSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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