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Report for CCDS9899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9899.1 Public Homo sapiens 14 TRIP11 24 110 108 CCDS HistoryNCBI Gene:9321Re-query CCDS DB by CCDS ID:9899.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9899.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267622.8 ENSP00000267622.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267622.8Link to Ensembl Protein Viewer:ENSP00000267622.4Re-query CCDS DB by Nucleotide ID:ENST00000267622Re-query CCDS DB by Protein ID:ENSP00000267622
Original member Current member NCBI NM_004239.4 NP_004230.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004239.4Link to Protein Sequence:NP_004230.2Re-query CCDS DB by Nucleotide ID:NM_004239Re-query CCDS DB by Protein ID:NP_004230Link to BLAST:NP_004230.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004230.2 1979 Q15643-1 1979 100% 0 0

Chromosomal Locations for CCDS 9899.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 91969673 91969893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91972717 91972861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91974627 91974743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91975172 91975286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91976108 91976189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91988284 91988383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91993809 91993912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91995352 91995515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91999240 91999433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 91999968 92000108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92003419 92006448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92007640 92007852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92010986 92011072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92011755 92011795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92014215 92014577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92015696 92015861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92017682 92017750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92021556 92021831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92025310 92025420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92033192 92033253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 92039547 92039685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5940 nt):
ATGTCGTCCTGGCTTGGGGGCCTCGGCTCCGGATTGGGCCAGTCTCTGGGTCAAGTCGGGGGCAGCCTGG
CTTCCCTCACTGGCCAGATATCAAACTTTACAAAGGATATGCTGATGGAGGGCACGGAGGAAGTGGAAGC
AGAATTACCTGATTCTAGGACAAAGGAAATTGAAGCCATTCATGCAATCTTGAGATCAGAGAATGAAAGG
CTTAAGAAACTTTGTACTGATCTAGAAGAGAAACATGAAGCATCAGAGATTCAAATAAAGCAGCAATCTA
CAAGTTACCGAAATCAACTTCAACAAAAAGAGGTAGAAATCAGCCATCTTAAAGCCAGACAGATTGCACT
CCAGGATCAGTTGCTGAAACTGCAGTCAGCTGCTCAGTCAGTACCTTCAGGAGCTGGTGTACCAGCAACC
ACTGCATCATCTTCATTCGCTTATGGGATTAGTCATCATCCTTCAGCTTTCCATGACGATGACATGGACT
TTGGTGATATAATTTCATCCCAACAAGAAATAAACCGACTCTCAAATGAAGTTTCAAGACTTGAGTCTGA
AGTTGGCCATTGGAGGCATATTGCTCAGACTTCCAAAGCACAAGGAACAGATAACTCTGATCAAAGTGAA
ATATGTAAACTACAAAATATCATTAAGGAACTAAAACAGAACCGAAGTCAGGAAATTGATGACCATCAAC
ATGAAATGTCAGTACTGCAGAATGCACACCAACAGAAATTGACAGAAATAAGTCGACGACATCGAGAAGA
ATTAAGTGACTATGAAGAACGAATTGAAGAACTTGAAAATCTGTTACAACAAGGTGGCTCTGGAGTTATA
GAAACTGATCTCTCTAAAATCTATGAGATGCAAAAAACTATTCAAGTTCTACAAATAGAAAAAGTGGAGT
CTACCAAAAAAATGGAACAACTTGAGGATAAAATAAAAGATATAAATAAAAAATTATCTTCTGCAGAAAA
TGACAGAGATATTTTGAGGAGAGAACAAGAACAGCTAAATGTGGAAAAGAGACAAATAATGGAAGAATGT
GAAAACTTGAAATTGGAATGTAGTAAATTGCAGCCTTCTGCTGTGAAGCAAAGTGATACTATGACAGAAA
AGGAAAGAATTCTTGCCCAGAGTGCATCAGTGGAAGAAGTGTTCAGACTACAACAAGCACTGTCTGATGC
CGAAAATGAAATAATGAGATTGAGTAGTTTAAACCAGGATAACAGTCTTGCTGAAGACAATCTGAAACTT
AAAATGCGTATCGAAGTTTTAGAAAAAGAGAAGTCATTACTGAGTCAAGAAAAGGAAGAACTTCAGATGT
CACTTTTAAAATTGAACAATGAATATGAAGTAATTAAAAGTACAGCTACAAGAGACATAAGTTTGGATTC
AGAATTACATGACTTAAGACTTAATTTGGAGGCAAAGGAACAAGAACTCAATCAGAGTATTAGTGAAAAG
GAAACACTGATAGCTGAGATAGAAGAATTGGACAGACAGAATCAAGAAGCTACAAAGCACATGATTTTGA
TAAAAGATCAGCTATCAAAACAACAAAATGAAGGAGATAGCATCATCAGTAAACTGAAACAAGATCTAAA
TGATGAAAAAAAGAGAGTTCATCAACTTGAAGATGATAAAATGGACATTACTAAAGAGTTAGATGTACAG
AAAGAAAAGCTAATTCAAAGTGAAGTGGCCCTAAATGATTTACATTTAACCAAGCAGAAACTTGAGGACA
AAGTAGAAAATTTAGTAGATCAGCTAAATAAATCACAAGAAAGTAATGTAAGCATCCAGAAGGAGAATTT
AGAACTTAAGGAGCATATTAGACAAAATGAGGAGGAGCTTTCTAGAATAAGGAATGAGTTAATGCAGTCT
CTAAATCAAGACTCTAATAGTAATTTTAAGGATACCTTACTTAAAGAAAGAGAAGCTGAAGTTAGAAACT
TAAAGCAAAATCTTTCAGAATTAGAACAGCTCAATGAAAATTTAAAGAAAGTTGCTTTTGATGTCAAAAT
GGAAAATGAAAAGTTAGTTTTAGCATGTGAAGATGTGAGGCATCAGTTAGAAGAATGTCTTGCTGGTAAC
AATCAGCTTTCTCTGGAAAAAAACACTATTGTGGAGACTCTAAAAATGGAAAAAGGAGAGATAGAGGCAG
AATTGTGTTGGGCTAAAAAGAGGCTGTTGGAAGAAGCAAACAAGTATGAGAAAACCATTGAAGAACTGTC
AAATGCACGTAATTTGAATACCTCTGCCTTACAGCTGGAACATGAGCATTTAATTAAACTCAATCAAAAG
AAAGACATGGAAATAGCAGAACTCAAAAAGAATATTGAACAAATGGATACTGACCATAAAGAAACTAAGG
ACGTTTTGTCATCTAGTTTAGAAGAGCAGAAGCAGTTGACACAACTTATAAACAAGAAAGAAATTTTTAT
TGAAAAGCTTAAAGAAAGAAGTTCAAAGCTGCAGGAGGAATTGGATAAATATTCTCAGGCCTTAAGAAAA
AATGAAATTTTAAGACAGACCATAGAGGAAAAAGACCGAAGTCTTGGATCCATGAAAGAGGAAAATAATC
ATCTGCAAGAAGAATTGGAACGACTCAGGGAAGAGCAGAGTCGAACCGCACCTGTGGCTGACCCTAAAAC
CCTTGATAGTGTTACTGAACTAGCATCTGAGGTATCTCAACTGAACACGATCAAGGAACATCTTGAAGAG
GAAATTAAACATCATCAAAAGATAATTGAAGATCAAAACCAGAGTAAGATGCAACTACTTCAGTCTTTAC
AAGAGCAAAAGAAGGAAATGGATGAGTTTAGATACCAGCATGAGCAAATGAACGCCACACACACCCAGCT
CTTTTTAGAGAAGGATGAGGAAATTAAGAGTTTGCAAAAAACAATTGAACAAATCAAAACCCAGTTGCAT
GAAGAAAGACAGGACATTCAAACAGATAACTCTGATATTTTTCAAGAAACAAAAGTTCAGAGCCTTAATA
TAGAAAATGGAAGTGAAAAGCATGATTTATCTAAAGCTGAAACGGAAAGATTAGTGAAAGGAATAAAAGA
GCGAGAACTGGAGATTAAACTTCTAAATGAAAAGAATATATCTTTAACTAAACAGATTGATCAGTTGTCC
AAAGATGAAGTTGGTAAACTAACTCAGATTATTCAGCAGAAAGATTTGGAGATACAAGCTCTTCATGCTA
GAATTTCTTCAACTTCCCATACTCAAGATGTTGTTTACCTTCAACAGCAACTGCAGGCTTATGCTATGGA
AAGAGAAAAGGTATTTGCTGTTTTGAATGAGAAGACTAGGGAAAATAGCCATCTAAAAACAGAATATCAC
AAAATGATGGATATTGTTGCTGCCAAGGAAGCAGCTCTTATCAAACTGCAAGATGAAAATAAAAAATTGT
CCACTAGATTTGAAAGTAGTGGCCAAGATATGTTTAGAGAAACTATTCAGAATTTATCACGTATCATTCG
AGAAAAAGACATCGAAATAGATGCACTAAGTCAGAAATGTCAGACTTTATTGGCAGTTTTACAAACATCC
AGCACTGGTAATGAGGCTGGAGGTGTTAATAGTAATCAATTTGAGGAGCTTCTACAGGAACGTGACAAGT
TAAAACAGCAAGTAAAGAAAATGGAAGAGTGGAAGCAGCAGGTGATGACCACAGTACAAAATATGCAACA
CGAGTCAGCCCAGCTTCAGGAAGAGCTTCACCAACTTCAAGCACAGGTTTTGGTTGACAGTGATAATAAT
TCTAAATTACAAGTGGACTATACTGGCCTGATCCAAAGTTATGAGCAGAATGAAACCAAACTCAAAAATT
TTGGGCAGGAATTAGCACAAGTTCAGCACAGCATTGGGCAGCTTTGCAATACCAAGGATCTTCTTTTAGG
AAAACTTGATATTATTTCACCCCAGCTGTCTTCTGCATCATTGCTTACTCCCCAGTCTGCAGAGTGTCTT
AGAGCAAGTAAGTCTGAAGTATTGAGTGAATCTTCTGAATTGCTTCAGCAAGAGTTAGAAGAGCTAAGAA
AATCACTACAGGAAAAAGATGCAACAATTAGAACTCTCCAGGAAAATAACCACAGATTGTCTGATTCGAT
TGCTGCCACCTCAGAGCTAGAAAGAAAAGAACACGAACAAACCGATTCAGAAATCAAGCAGCTAAAGGAG
AAACAAGATGTTTTGCAAAAGTTACTTAAGGAAAAAGACCTCTTAATCAAAGCCAAAAGTGATCAACTAC
TTTCTTCCAATGAAAATTTCACTAACAAAGTAAATGAAAACGAACTTTTGAGGCAGGCAGTAACAAACCT
GAAGGAGAGAATATTAATTCTAGAGATGGACATTGGCAAACTAAAAGGAGAAAATGAAAAAATAGTGGAA
ACATACAGGGGAAAGGAAACAGAATATCAAGCGTTACAAGAGACTAACATGAAGTTTTCTATGATGCTGC
GAGAAAAAGAGTTTGAGTGCCACTCAATGAAGGAGAAGGCTCTTGCTTTTGAACAGCTATTGAAAGAGAA
AGAACAGGGCAAGACTGGAGAGTTAAATCAGCTTTTAAATGCAGTTAAATCAATGCAGGAGAAGACAGTT
GTGTTTCAACAGGAGAGAGACCAAGTCATGTTGGCCCTGAAACAAAAACAAATGGAAAATACTGCCCTAC
AGAATGAGGTTCAACGTTTACGTGACAAAGAATTTCGTTCAAACCAAGAGCTAGAGAGATTGCGTAATCA
TCTTTTAGAATCAGAAGATTCTTATACCCGTGAAGCTTTGGCTGCAGAAGATAGAGAGGCTAAACTAAGA
AAGAAAGTCACAGTATTGGAGGAAAAGCTAGTTTCATCCTCTAATGCAATGGAAAATGCAAGCCATCAAG
CCAGTGTGCAGGTAGAGTCATTGCAAGAACAGTTGAATGTAGTTTCCAAGCAAAGGGATGAAACTGCGCT
GCAGCTTTCTGTCTCTCAGGAACAAGTAAAGCAGTATGCTCTGTCACTGGCCAACCTGCAGATGGTACTA
GAGCATTTCCAACAAGAGGAAAAAGCTATGTATTCTGCTGAACTCGAAAAGCAAAAACAGCTTATAGCTG
AATGGAAGAAAAACGCAGAAAATCTGGAAGGAAAAGTGATATCATTACAGGAATGTTTGGATGAAGCAAA
TGCTGCATTGGATTCAGCATCAAGACTTACAGAACAGTTAGATGTAAAAGAAGAACAAATTGAAGAACTT
AAAAGACAAAATGAGCTCCGACAAGAAATGCTGGATGATGTACAAAAGAAATTGATGAGCTTAGCAAACA
GCTCAGAAGGAAAAGTAGACAAAGTCCTAATGAGAAACCTCTTCATTGGTCATTTCCACACACCGAAAAA
TCAGCGTCATGAAGTGTTACGGTTAATGGGGAGCATCCTGGGCGTCAGAAGGGAGGAGATGGAGCAGTTG
TTTCATGACGATCAGGGCGGTGTTACCAGGTGGATGACTGGGTGGCTTGGAGGAGGATCAAAAAGTGTTC
CCAACACACCTTTGAGACCAAATCAGCAATCTGTGGTTAATAGTTCTTTTTCAGAACTTTTTGTTAAATT
TCTAGAAACAGAATCTCATCCATCCATTCCACCACCAAAGCTTTCTGTTCATGATATGAAACCTCTGGAT
TCACCAGGAAGAAGAAAAAGAGATACAAATGCACCAGAAAGTTTTAAAGATACAGCAGAATCCAGGTCTG
GTAGAAGAACAGATGTAAATCCGTTTTTGGCTCCTCGCTCGGCAGCTGTACCTCTTATTAACCCAGCTGG
ACTTGGACCTGGTGGGCCCGGGCATCTTCTTCTGAAACCCATCTCAGATGTTTTGCCCACATTTACACCT
TTGCCAGCGTTACCTGACAACAGTGCTGGGGTTGTGCTGAAAGACCTTTTAAAGCAATAG

Translation (1979 aa):
MSSWLGGLGSGLGQSLGQVGGSLASLTGQISNFTKDMLMEGTEEVEAELPDSRTKEIEAIHAILRSENER
LKKLCTDLEEKHEASEIQIKQQSTSYRNQLQQKEVEISHLKARQIALQDQLLKLQSAAQSVPSGAGVPAT
TASSSFAYGISHHPSAFHDDDMDFGDIISSQQEINRLSNEVSRLESEVGHWRHIAQTSKAQGTDNSDQSE
ICKLQNIIKELKQNRSQEIDDHQHEMSVLQNAHQQKLTEISRRHREELSDYEERIEELENLLQQGGSGVI
ETDLSKIYEMQKTIQVLQIEKVESTKKMEQLEDKIKDINKKLSSAENDRDILRREQEQLNVEKRQIMEEC
ENLKLECSKLQPSAVKQSDTMTEKERILAQSASVEEVFRLQQALSDAENEIMRLSSLNQDNSLAEDNLKL
KMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDISLDSELHDLRLNLEAKEQELNQSISEK
ETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDEKKRVHQLEDDKMDITKELDVQ
KEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQS
LNQDSNSNFKDTLLKEREAEVRNLKQNLSELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGN
NQLSLEKNTIVETLKMEKGEIEAELCWAKKRLLEEANKYEKTIEELSNARNLNTSALQLEHEHLIKLNQK
KDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELDKYSQALRK
NEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDSVTELASEVSQLNTIKEHLEE
EIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMNATHTQLFLEKDEEIKSLQKTIEQIKTQLH
EERQDIQTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLVKGIKERELEIKLLNEKNISLTKQIDQLS
KDEVGKLTQIIQQKDLEIQALHARISSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYH
KMMDIVAAKEAALIKLQDENKKLSTRFESSGQDMFRETIQNLSRIIREKDIEIDALSQKCQTLLAVLQTS
STGNEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVLVDSDNN
SKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIISPQLSSASLLTPQSAECL
RASKSEVLSESSELLQQELEELRKSLQEKDATIRTLQENNHRLSDSIAATSELERKEHEQTDSEIKQLKE
KQDVLQKLLKEKDLLIKAKSDQLLSSNENFTNKVNENELLRQAVTNLKERILILEMDIGKLKGENEKIVE
TYRGKETEYQALQETNMKFSMMLREKEFECHSMKEKALAFEQLLKEKEQGKTGELNQLLNAVKSMQEKTV
VFQQERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELERLRNHLLESEDSYTREALAAEDREAKLR
KKVTVLEEKLVSSSNAMENASHQASVQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVL
EHFQQEEKAMYSAELEKQKQLIAEWKKNAENLEGKVISLQECLDEANAALDSASRLTEQLDVKEEQIEEL
KRQNELRQEMLDDVQKKLMSLANSSEGKVDKVLMRNLFIGHFHTPKNQRHEVLRLMGSILGVRREEMEQL
FHDDQGGVTRWMTGWLGGGSKSVPNTPLRPNQQSVVNSSFSELFVKFLETESHPSIPPPKLSVHDMKPLD
SPGRRKRDTNAPESFKDTAESRSGRRTDVNPFLAPRSAAVPLINPAGLGPGGPGHLLLKPISDVLPTFTP
LPALPDNSAGVVLKDLLKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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