NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57120.1 Public Mus musculus 18 Pcdhb20 23 108 98 CCDS HistoryNCBI Gene:93891Re-query CCDS DB by CCDS ID:57120.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052179.7 ENSMUSP00000137038.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052179.7Link to Ensembl Protein Viewer:ENSMUSP00000137038.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052179Re-query CCDS DB by Protein ID:ENSMUSP00000137038
Original member NCBI NM_053145.2 NP_444375.2 Updated not alive Link to Nucleotide Sequence:NM_053145.2Link to Protein Sequence:NP_444375.2Re-query CCDS DB by Nucleotide ID:NM_053145Re-query CCDS DB by Protein ID:NP_444375
Current member NCBI NM_053145.3 NP_444375.2 Accepted alive Link to Nucleotide Sequence:NM_053145.3Link to Protein Sequence:NP_444375.2Re-query CCDS DB by Nucleotide ID:NM_053145Re-query CCDS DB by Protein ID:NP_444375Link to BLAST:NP_444375.2

Chromosomal Locations for CCDS 57120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37504423 37506822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGGAAGGAGAAGGGCTCTCATCCTGCAGAAAAGGCAAGTCTTGGTTTTCTTTGTTTTCCTGGGATTGT
CT
CAGGCGAGTGCTGAATCTTTGCGCTATTCTGTAGCAGAGGAAACAGAAATTGGCTCTTTTGTGGCTAA
T
CTGGCAAAGGATTTAGGACTGGGGGTTGCGGAGCTGTCCTCCAGGGAGGCCAGGGTAGTGTCAGATGAT
AAT
AAAAAGCATTTACTCCTTAATTTGCTGACTGGAGATATGCTCCTGAATGAGCGACTGGATCGTGAAG
AG
CTATGTGGCTCCACCCAGCCCTGTGTGCTGCCCTTTCAGGTGGTACTGGAAAACCCCTTACAGTTCTA
T
CGAGCTGAGCTGCACGTCAGAGATATAAATGATCACTCCCCTACATTCCTAGACAAGGAAATAACTATT
AAA
ATATCAGAAAGCACTACTATCGGAGCCACATTCTTAATTGAGAATGCACAAGATCTGGACATAGGAA
GC
AACAGTCTTCAGGACTACAGCATTAGCCCCAGTTCTTATTTCTATGTTAAAATTCATGACAGTGGCGA
T
GGAAAGATATACCCGGAGCTGGTTCTGGACAAAGCTTTAGATCATGAGGAGGAATCTGAGCTTAGATTG
ACA
CTTACAGCATTAGATGGTGGGTCTCCACCCAGGTCTGGGACAACACTGATTGTCATAAAAGTCTTGG
AC
ATCAACGATAATGCTCCAGAGTTCGCTCAGAGTTTCTATGAGGTGCAGGTCCCAGAGGACATGCCTAT
T
GGCTCCAGTATTACTGCCATCTCTGCTAAAGATTTAGATATGGGAATTTATGGGAAAATTTCATATTCA
TTT
TTGCATGCATCAGAAGATATTAGAAAAACCTTTGAAATCAACCCAACATCTGGGGAAGTCAATTTGA
GA
TCACTAATGGATTTTGAAGTAATACAGTCCTATTCTGTAAATATCCAAGCAACAGATGGTGGAGGTCT
T
TCTGCAAAATGCACTCTTTCGGTTAAAGTATTAGATATAAATGACAATGCACCAGAAGTGATCATGTCG
TCG
GTTACAAAGGCAATTCCAGAAAATGCTTCAGAGACCCTGGTCGCTCTATTCAGTGTCCGAGATCAAG
AC
TCTGGAGACAACGGAAGGATCCTTTGCTCTATTCAGGATGACCTTCCATTTATTCTGAAACCAAGCTT
C
AAGAATTTTTTCACTCTACTTTCTGAAAAAGCACTAGACAGAGAAAGGAGAGCTGAGTACAACATCACC
ATC
ACTGCCTCCGACATGGGCACACCCAGGCTCACAACCCAGCACACCATAAGAGTACAGGTATCTGACA
TC
AATGACAATGCCCCGGCCTTCACCCAAACCTCCTACACCATGTTCATCTACGAGAACAACAGCCCTGC
C
CTGCACATAGGCACCATCAGTGCCACAGACAAAGACTCAGGCTCCAATGCCCACATCACCTACTCGCTG
CTA
CCGGCTCAGGACCCAGAGCTGGCCCTCGCCTCGCTCATCTCCATTAACGCTGACAACGGGCAGCTAT
TT
GCGCTCAGGGCGCTGGACTATGAGGTCCTGCAGGCCTTCGAGTTCCAAGTGGGTGCGACAGACCGAGG
C
TCGCCCGCACTCAGCAGCCAGACTCTGGTGCGCGTGGTAGTGCTGGACGACAATGACAATGCGCCCTTC
GTG
CTCTACCCGATGCAGAACGCCTCTGCGCCTTGCACTGAGCTGCTGCCCAGGGTGGCAGAACCTGGCT
AC
CTGGTCACCAAAGTAGTGGCTGTGGATCGCGACTCTGGCCAGAATGCCTGGCTGTCGTTCCAGCTGCT
C
AAGGCTACAGAGCCAGGGCTGTTCAGCGTGTGGGCGCACAATGGCGAGGTACGCACTACCAGGCTGCTG
AGC
GAGCGCGATGTGCCCAAGCACAGGCTGGTACTGCTAGTCAAGGACAATGGCGATCCTCCGCGCTCTG
CC
AGCGTCACGCTGCACGTGCTAGTGGTGGATGGCTTCTCTCAGCCCTACCTGCCTCTGCCAGAGGTGGC
G
CGCGACCCTGCACAAGAAGAAGATGTACTAACACTCTACCTGGTCATAGCCTTGGCATCTGTGTCTTCT
CTC
TTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAGGCTGTGCAGGAGGGCCAGGGCTGCCTCTCTGG
GT
GGCTGCTCTGTGCCTGAGGGACACTTTCCTGGCCATCTGGTGGACGTTACTGGCACTGGAACCCTGTC
C
CAGAACTACCAATATGAGGTGTGTTTCACAGGAGGTACTGGAACGAATGAGTTCAAATTCCTTAGGCCG
GTC
ATGCCCAGTCTTCAGCTCCATGACCCTGATTCTAATATGCTGGAAAAGGAGAACTTTCGCAATAGCC
TT
GGTTTTAATATTCAATAA


Translation (799 aa):
MGRRRALILQKRQVLVFFVFLGLSQASAESLRYSVAEETEIGSFVANLAKDLGLGVAELSSREARVVSDD
N
KKHLLLNLLTGDMLLNERLDREELCGSTQPCVLPFQVVLENPLQFYRAELHVRDINDHSPTFLDKEITI
K
ISESTTIGATFLIENAQDLDIGSNSLQDYSISPSSYFYVKIHDSGDGKIYPELVLDKALDHEEESELRL
T
LTALDGGSPPRSGTTLIVIKVLDINDNAPEFAQSFYEVQVPEDMPIGSSITAISAKDLDMGIYGKISYS
F
LHASEDIRKTFEINPTSGEVNLRSLMDFEVIQSYSVNIQATDGGGLSAKCTLSVKVLDINDNAPEVIMS
S
VTKAIPENASETLVALFSVRDQDSGDNGRILCSIQDDLPFILKPSFKNFFTLLSEKALDRERRAEYNIT
I
TASDMGTPRLTTQHTIRVQVSDINDNAPAFTQTSYTMFIYENNSPALHIGTISATDKDSGSNAHITYSL
L
PAQDPELALASLISINADNGQLFALRALDYEVLQAFEFQVGATDRGSPALSSQTLVRVVVLDDNDNAPF
V
LYPMQNASAPCTELLPRVAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLL
S
ERDVPKHRLVLLVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVARDPAQEEDVLTLYLVIALASVSS
L
FLLSVLLFVGVRLCRRARAASLGGCSVPEGHFPGHLVDVTGTGTLSQNYQYEVCFTGGTGTNEFKFLRP
V
MPSLQLHDPDSNMLEKENFRNSLGFNIQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser