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Report for CCDS28356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28356.1 Public Mus musculus 16 B3galt5 23 108 98 CCDS HistoryNCBI Gene:93961Re-query CCDS DB by CCDS ID:28356.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099497.3 ENSMUSP00000097096.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099497.3Link to Ensembl Protein Viewer:ENSMUSP00000097096.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099497Re-query CCDS DB by Protein ID:ENSMUSP00000097096
Original member Current member EBI ENSMUST00000113800.8 ENSMUSP00000109431.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113800.8Link to Ensembl Protein Viewer:ENSMUSP00000109431.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113800Re-query CCDS DB by Protein ID:ENSMUSP00000109431
Original member Current member NCBI NM_001122993.1 NP_001116465.1 Accepted alive Link to Nucleotide Sequence:NM_001122993.1Link to Protein Sequence:NP_001116465.1Re-query CCDS DB by Nucleotide ID:NM_001122993Re-query CCDS DB by Protein ID:NP_001116465Link to BLAST:NP_001116465.1
Original member Current member NCBI NM_001358389.1 NP_001345318.1 Accepted alive Link to Nucleotide Sequence:NM_001358389.1Link to Protein Sequence:NP_001345318.1Re-query CCDS DB by Nucleotide ID:NM_001358389Re-query CCDS DB by Protein ID:NP_001345318Link to BLAST:NP_001345318.1
Original member Current member NCBI NM_001358390.1 NP_001345319.1 Accepted alive Link to Nucleotide Sequence:NM_001358390.1Link to Protein Sequence:NP_001345319.1Re-query CCDS DB by Nucleotide ID:NM_001358390Re-query CCDS DB by Protein ID:NP_001345319Link to BLAST:NP_001345319.1
Original member Current member NCBI NM_033149.3 NP_149161.1 Accepted alive Link to Nucleotide Sequence:NM_033149.3Link to Protein Sequence:NP_149161.1Re-query CCDS DB by Nucleotide ID:NM_033149Re-query CCDS DB by Protein ID:NP_149161Link to BLAST:NP_149161.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116465.1 308 Q9JI67 308 100% 0 0
NP_001345318.1 308 Q9JI67 308 100% 0 0
NP_001345319.1 308 Q9JI67 308 100% 0 0
NP_149161.1 308 Q9JI67 308 100% 0 0

Chromosomal Locations for CCDS 28356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 96315169 96316095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCTCACATGAAGACAAGGCTAGTTTACGCCTCCATTCTCATGATGGGCGCACTCTGCTTGTACTTCA
GCATGGATTCTTTCAGAGAACTCCCGTTTGTTTTTAAGAAAAGTCACGGGAAGTTCCTTCAGATTCCGGA
TATAGACTGCAAGCAGAAGCCGCCTTTCCTGGTGCTGCTGGTGACGTCATCTCACAAGCAGCTGGCCGCT
CGCATGGCCATCCGCAAGACGTGGGGTAGAGAGACATCTGTGCAGGGCCAACAGGTGAGGACCTTCTTCC
TTCTGGGGACCTCCGACAGCACCGAGGAGATGGACGCCACAACCCTGGAGAGCGAGCAGCACCGCGACAT
TATCCAGAAGGACTTCAAGGATGCCTACTTCAACCTGACCCTGAAAACCATGATGGGTATGGAATGGGTC
TACCACTTTTGTCCTCAGACAGCTTACGTGATGAAAACGGACTCTGACATGTTTGTGAATGTTGGCTATC
TGACGGAACTGCTGCTAAAGAAAAACAAAACGACCAGGTTCTTCACAGGCTACATAAAGCCCCACGACTT
TCCCATCCGGCAGAAGTTCAACAAGTGGTTTGTGAGTAAGTTCGAATATCCCTGGGACAGGTACCCACCT
TTTTGCTCTGGTACTGGTTATGTCTTTTCCAGCGACGTGGCGATCCAAGTATACAACGTCTCAGAGAGCG
TTCCGTTCATCAAGCTGGAGGATGTGTTTGTTGGGCTCTGCTTGGCCAAGCTAAAGATCCGGCCGGAGGA
GCTGCACACCAAACAGACCTTCTTCCCTGGCGGTTTACGCTTTTCCGTGTGCCGCTTTCAGAAAATTGTG
GCATGCCATTTTATGAAGCCCCAGGACCTGCTCACTTACTGGCAAGCACTGGAGAACTCGAAAGAACAGG
ACTGCCCTGCTGTCTGA

Translation (308 aa):
MAHMKTRLVYASILMMGALCLYFSMDSFRELPFVFKKSHGKFLQIPDIDCKQKPPFLVLLVTSSHKQLAA
RMAIRKTWGRETSVQGQQVRTFFLLGTSDSTEEMDATTLESEQHRDIIQKDFKDAYFNLTLKTMMGMEWV
YHFCPQTAYVMKTDSDMFVNVGYLTELLLKKNKTTRFFTGYIKPHDFPIRQKFNKWFVSKFEYPWDRYPP
FCSGTGYVFSSDVAIQVYNVSESVPFIKLEDVFVGLCLAKLKIRPEELHTKQTFFPGGLRFSVCRFQKIV
ACHFMKPQDLLTYWQALENSKEQDCPAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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