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Report for CCDS25263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25263.1 Public Mus musculus 11 Mrpl27 23 108 98 CCDS HistoryNCBI Gene:94064Re-query CCDS DB by CCDS ID:25263.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025278.7 ENSMUSP00000025278.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025278.7Link to Ensembl Protein Viewer:ENSMUSP00000025278.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025278Re-query CCDS DB by Protein ID:ENSMUSP00000025278
Original member Current member NCBI NM_053161.2 NP_444391.1 Accepted alive Link to Nucleotide Sequence:NM_053161.2Link to Protein Sequence:NP_444391.1Re-query CCDS DB by Nucleotide ID:NM_053161Re-query CCDS DB by Protein ID:NP_444391Link to BLAST:NP_444391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444391.1 148 Q99N92 148 100% 0 0

Chromosomal Locations for CCDS 25263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94653802 94653841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94656487 94656618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94656983 94657050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94659609 94659815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGGCGGCGGCGGCGCTTACGCTGAGGACGCGGGCAGCAGTGACAGCCCTGCTGAGCCCCACAGCACCCA
CAGCACTCGCTGTCAGACATGCATCCAAGAAGACAGGTGGCAGCTCTAAGAACCTTGGTGGGAAATCACG
AGGCAAACACTACGGCATCAAGAAAATGGAAGGTCACTACGTTCACGCTGGCAACATCCTTGGCACTCAG
CGTCAGTTTAGATGGCACCCGGGAGCCCATGTGGGGCTTGGGAGGAACAAGTGCCTGTATGCCCTGGAGG
AGGGGATAGTCCGCTACACGAAAGATGTCTACGTGCCCAATCCCAAAAACACGGAGGCTGTGGATCTGGT
CACTAGTCTGCCCAAGGGTGCTGTGCTCTACAAGACTTTTGTCCACGTGGTTCCTGCCAAACCTGAGGGA
ACCTTCAAACTAGTGGACATGCTTTGA

Translation (148 aa):
MAAAALTLRTRAAVTALLSPTAPTALAVRHASKKTGGSSKNLGGKSRGKHYGIKKMEGHYVHAGNILGTQ
RQFRWHPGAHVGLGRNKCLYALEEGIVRYTKDVYVPNPKNTEAVDLVTSLPKGAVLYKTFVHVVPAKPEG
TFKLVDML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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