NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4498.1 Public Homo sapiens 6 LY86 24 110 108 CCDS HistoryNCBI Gene:9450Re-query CCDS DB by CCDS ID:4498.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4498.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230568.5 ENSP00000230568.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230568.5Link to Ensembl Protein Viewer:ENSP00000230568.3Re-query CCDS DB by Nucleotide ID:ENST00000230568Re-query CCDS DB by Protein ID:ENSP00000230568
Original member Current member EBI ENST00000379953.6 ENSP00000369286.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379953.6Link to Ensembl Protein Viewer:ENSP00000369286.1Re-query CCDS DB by Nucleotide ID:ENST00000379953Re-query CCDS DB by Protein ID:ENSP00000369286
Original member Current member NCBI NM_004271.4 NP_004262.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004271.4Link to Protein Sequence:NP_004262.1Re-query CCDS DB by Nucleotide ID:NM_004271Re-query CCDS DB by Protein ID:NP_004262Link to BLAST:NP_004262.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004262.1 162 O95711 162 100% 0 0

Chromosomal Locations for CCDS 4498.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 6588735 6588870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6624926 6625012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6626293 6626421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6649625 6649677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6654544 6654627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGAAGGGTTTCACAGCCACTCTCTTCCTCTGGACTCTGATTTTTCCCAGCTGCAGTGGAGGCGGCGGTG
GGAAAGCCTGGCCCACACACGTGGTCTGTAGCGACAGCGGCTTGGAAGTGCTCTACCAGAGTTGCGATCC
ATTACAAGATTTTGGCTTTTCTGTTGAAAAGTGTTCCAAGCAATTAAAATCAAATATCAACATTAGATTT
GGAATTATTCTGAGAGAGGACATCAAAGAGCTTTTTCTTGACCTAGCTCTCATGTCTCAAGGCTCATCTG
TTTTGAATTTCTCCTATCCCATCTGTGAGGCGGCTCTGCCCAAGTTTTCTTTCTGTGGAAGAAGGAAAGG
AGAGCAGATTTACTATGCTGGGCCTGTCAATAATCCTGAATTTACTATTCCTCAGGGAGAATACCAGGTT
TTGCTGGAACTGTACACTGAAAAACGGTCCACCGTGGCCTGTGCCAATGCTACTATCATGTGCTCCTGA

Translation (162 aa):
MKGFTATLFLWTLIFPSCSGGGGGKAWPTHVVCSDSGLEVLYQSCDPLQDFGFSVEKCSKQLKSNINIRF
GIILREDIKELFLDLALMSQGSSVLNFSYPICEAALPKFSFCGRRKGEQIYYAGPVNNPEFTIPQGEYQV
LLELYTEKRSTVACANATIMCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH