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Report for CCDS19362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19362.1 Public Mus musculus 5 Nmu 23 108 98 CCDS HistoryNCBI Gene:56183Re-query CCDS DB by CCDS ID:19362.1Re-query CCDS DB by GeneID:56183See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19362.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031146.2 ENSMUSP00000031146.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031146.2Link to Ensembl Protein Viewer:ENSMUSP00000031146.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000031146Re-query CCDS DB by Protein ID:ENSMUSP00000031146
Original member Current member NCBI NM_019515.1 NP_062388.1 Accepted alive Link to Nucleotide Sequence:NM_019515.1Link to Protein Sequence:NP_062388.1Re-query CCDS DB by Nucleotide ID:NM_019515Re-query CCDS DB by Protein ID:NP_062388Link to BLAST:NP_062388.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062388.1 174 Q9QXK8 174 100% 0 0

Chromosomal Locations for CCDS 19362.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76335827 76335862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76337438 76337491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76340762 76340830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76343922 76343972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76344064 76344093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76345439 76345498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76350112 76350159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76358351 76358409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76363555 76363672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGTCGCGAGCAGCGGGTCACCGTCCAGGGCTGTCCGCAGGACAATTGGCTGCTGCAACCGCATCTCCTC
TCCTGTCACTGCTGCTGCTGCTCGCCTGCTGTGCAGACGCTTGCAAAGGTGTGCCAATATCACCTCAAAG
ATTGCAGCCAGAACAAGAACTACAATTGTGGAATGAGATTCATGAAGCTTGTGCGTCCTTTCTGTCCATT
GATTCCAGGCCTCAGGCATCTGTTGCACTGAGGGAGCTTTGCCGTATAGTGATGGAGATTTCCCAGAAGC
CTCAGGAACAAAGTGAGAAAGATAATACTAAGAGGTTCTTATTTCACTATTCAAAGACACAGAAGTTGGG
AAATTCAAATGTTGTGTCCTCTGTTGTGCATCCGTTGCTGCAGCTCGTCCCTCAACTGCATGAGAGAAGA
ATGAAGAGATTCAAAGCAGAATACCAGAGTCCTTCCGTGGGTCAAAGTAAGGGATACTTTTTATTCAGGC
CACGCAACGGGAAGAGGTCAACAAGTTTCATTTAA

Translation (174 aa):
MSRAAGHRPGLSAGQLAAATASPLLSLLLLLACCADACKGVPISPQRLQPEQELQLWNEIHEACASFLSI
DSRPQASVALRELCRIVMEISQKPQEQSEKDNTKRFLFHYSKTQKLGNSNVVSSVVHPLLQLVPQLHERR
MKRFKAEYQSPSVGQSKGYFLFRPRNGKRSTSFI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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