NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5730.1 Public Homo sapiens 7 PMPCB 24 110 108 CCDS HistoryNCBI Gene:9512Re-query CCDS DB by CCDS ID:5730.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249269.9 ENSP00000249269.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249269.9Link to Ensembl Protein Viewer:ENSP00000249269.4Re-query CCDS DB by Nucleotide ID:ENST00000249269Re-query CCDS DB by Protein ID:ENSP00000249269
Original member Current member NCBI NM_004279.3 NP_004270.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004279.3Link to Protein Sequence:NP_004270.2Re-query CCDS DB by Nucleotide ID:NM_004279Re-query CCDS DB by Protein ID:NP_004270Link to BLAST:NP_004270.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004270.2 489 O75439 489 100% 0 0

Chromosomal Locations for CCDS 5730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103297460 103297558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103298568 103298708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103299443 103299529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103300178 103300307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103303842 103304040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103304411 103304490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103307596 103307708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103308952 103309095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103310315 103310475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103311643 103311728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103311808 103311896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103312056 103312131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103312207 103312271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGCGGCTGCGGCGGCTCGAGTGGTGTTGTCATCCGCGGCGCGGCGGCGGCTCTGGGGTTTCAGCGAGA
GTCTTCTAATCCGAGGCGCTGCGGGACGGTCATTATATTTTGGAGAGAACAGATTAAGAAGTACACAGGC
TGCTACCCAAGTTGTTCTGAATGTTCCTGAAACAAGAGTAACATGTTTAGAAAGTGGACTCAGAGTAGCT
TCGGAAGACTCTGGGCTCTCAACATGCACAGTTGGACTCTGGATTGATGCTGGAAGTAGATACGAAAATG
AGAAGAACAATGGAACAGCACACTTTCTGGAGCATATGGCTTTCAAGGGCACCAAGAAGAGATCCCAGTT
AGATCTGGAACTTGAGATTGAAAATATGGGTGCTCATCTCAATGCCTATACCTCCAGAGAGCAGACTGTA
TACTATGCCAAAGCATTCTCTAAAGACTTGCCAAGAGCTGTAGAAATTCTTGCTGATATAATACAAAACA
GCACATTGGGAGAAGCAGAGATTGAACGTGAGCGTGGAGTAATCCTTAGAGAGATGCAGGAAGTTGAAAC
CAATTTACAAGAAGTTGTTTTTGATTATCTTCATGCCACAGCTTATCAAAATACTGCACTTGGACGGACA
ATTTTGGGACCAACTGAAAATATCAAATCTATAAGTCGTAAGGACTTAGTGGATTATATAACCACACATT
ATAAGGGGCCAAGAATAGTGCTTGCTGCTGCTGGAGGTGTTTCCCATGATGAATTGCTTGACTTAGCAAA
GTTTCATTTCGGTGACTCTTTATGCACACACAAAGGAGAAATACCAGCTCTGCCTCCCTGCAAATTCACA
GGAAGTGAGATTCGTGTGAGGGATGACAAGATGCCTTTGGCGCACCTTGCAATAGCTGTTGAAGCTGTTG
GTTGGGCACATCCAGATACAATCTGTCTCATGGTTGCAAACACGCTGATTGGCAACTGGGATCGCTCTTT
TGGGGGAGGAATGAATTTATCTAGCAAGCTGGCCCAGCTCACTTGTCATGGCAATCTTTGCCATAGCTTT
CAGTCTTTCAACACTTCCTACACAGATACAGGATTATGGGGACTGTATATGGTTTGTGAATCATCCACTG
TTGCAGACATGCTACATGTTGTTCAAAAAGAATGGATGCGACTCTGTACAAGTGTCACAGAAAGTGAGGT
TGCACGAGCCAGAAATCTTCTGAAAACAAACATGTTGTTGCAGCTTGATGGTTCAACTCCAATTTGTGAA
GATATTGGTAGGCAAATGTTATGCTATAATAGAAGGATTCCCATCCCTGAGCTTGAAGCAAGAATTGATG
CTGTGAATGCTGAGACAATTCGAGAAGTATGTACCAAATACATTTATAATAGGAGTCCAGCTATTGCTGC
TGTTGGTCCCATTAAGCAACTACCAGATTTTAAACAGATACGCAGTAACATGTGTTGGCTTCGTGATTAA

Translation (489 aa):
MAAAAARVVLSSAARRRLWGFSESLLIRGAAGRSLYFGENRLRSTQAATQVVLNVPETRVTCLESGLRVA
SEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTV
YYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRT
ILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLCTHKGEIPALPPCKFT
GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSF
QSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICE
DIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCWLRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH