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Report for CCDS2204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2204.1 Public Homo sapiens 2 CYTIP 24 110 108 CCDS HistoryNCBI Gene:9595Re-query CCDS DB by CCDS ID:2204.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2204.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264192.8 ENSP00000264192.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264192.8Link to Ensembl Protein Viewer:ENSP00000264192.3Re-query CCDS DB by Nucleotide ID:ENST00000264192Re-query CCDS DB by Protein ID:ENSP00000264192
Original member Current member NCBI NM_004288.5 NP_004279.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004288.5Link to Protein Sequence:NP_004279.3Re-query CCDS DB by Nucleotide ID:NM_004288Re-query CCDS DB by Protein ID:NP_004279Link to BLAST:NP_004279.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004279.3 359 O60759-1 359 100% 0 0

Chromosomal Locations for CCDS 2204.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157415677 157416143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157418523 157418589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157427351 157427420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157430559 157430652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157430860 157430962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157434370 157434424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157434698 157434747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157443847 157444020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGTCTTTACAAAGGCTCCTGCAACACAGCAGCAATGGCAATTTGGCGGACTTCTGCGCTGGGCCAGCGT
ATAGCTCTTACTCCACACTCACCGGCAGCCTTACGATGGACGATAATAGAAGGATTCAAATGCTAGCAGA
CACGGTGGCTACTCTGCCTCGGGGACGAAAGCAGCTTGCTTTGACCAGATCAAGTTCTTTAAGTGACTTT
TCCTGGTCTCAAAGAAAGCTTGTTACTGTGGAGAAGCAGGATAATGAAACATTTGGATTTGAAATTCAGT
CTTACAGGCCCCAGAATCAGAATGCCTGCTCCTCGGAAATGTTCACTTTGATATGCAAAATACAGGAGGA
CAGCCCAGCTCACTGTGCTGGCCTGCAAGCTGGTGATGTCCTTGCAAATATCAATGGTGTGAGCACAGAA
GGTTTTACCTACAAACAAGTCGTTGACCTGATCAGATCGTCCGGAAACCTGCTAACGATAGAGACTCTTA
ATGGAACAATGATTCTGAAAAGAACGGAGCTTGAAGCAAAGCTGCAGGTTTTAAAGCAAACTTTGAAACA
AAAATGGGTGGAGTACAGATCTCTGCAGTTACAGGAACATCGTCTGCTTCATGGTGATGCAGCTAATTGC
CCCAGTTTGGAAAACATGGACTTGGATGAATTGTCTTTGTTTGGACCCCTGCCTGGGCCAGGCCCAGCCC
TTGTGGACCGGAATCGATTATCCAGTGAGAGCAGCTGTAAGAGCTGGCTGAGCTCCATGACGATGGACAG
TGAAGATGGCTACCAGACGTGTGTGTCTGAGGACTCCAGCAGGGGTGCCTTCAGTCGGCAGACGAGTACA
GATGATGAGTGCTTTATCCCCAAGGAGGGGGATGATTTTCTGAGGAGGTCATCTTCAAGGAGGAACCGGA
GCATCAGTAACACCAGCAGCGGATCCATGTCTCCCTTGTGGGAGGGCAACTTATCAAGCATGTTTGGGAC
CCTGCCCCGGAAGAGCAGAAAGGGAAGTGTCCGAAAGCAACTCTTGAAATTTATCCCTGGCCTTCATCGT
GCTGTGGAAGAGGAAGAAAGTCGCTTTTGA

Translation (359 aa):
MSLQRLLQHSSNGNLADFCAGPAYSSYSTLTGSLTMDDNRRIQMLADTVATLPRGRKQLALTRSSSLSDF
SWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTE
GFTYKQVVDLIRSSGNLLTIETLNGTMILKRTELEAKLQVLKQTLKQKWVEYRSLQLQEHRLLHGDAANC
PSLENMDLDELSLFGPLPGPGPALVDRNRLSSESSCKSWLSSMTMDSEDGYQTCVSEDSSRGAFSRQTST
DDECFIPKEGDDFLRRSSSRRNRSISNTSSGSMSPLWEGNLSSMFGTLPRKSRKGSVRKQLLKFIPGLHR
AVEEEESRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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