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Report for CCDS93032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93032.1 Public Homo sapiens 20 SPAG4 24 110 108 CCDS HistoryNCBI Gene:6676Re-query CCDS DB by CCDS ID:93032.1Re-query CCDS DB by GeneID:6676See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93032.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000679710.1 ENSP00000505928.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679710.1Link to Ensembl Protein Viewer:ENSP00000505928.1Re-query CCDS DB by Nucleotide ID:ENST00000679710Re-query CCDS DB by Protein ID:ENSP00000505928
Original member Current member NCBI NM_001317931.1 NP_001304860.1 Accepted alive Link to Nucleotide Sequence:NM_001317931.1Link to Protein Sequence:NP_001304860.1Re-query CCDS DB by Nucleotide ID:NM_001317931Re-query CCDS DB by Protein ID:NP_001304860Link to BLAST:NP_001304860.1

Chromosomal Locations for CCDS 93032.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35616216 35616288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35617136 35617240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35617520 35617586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35617779 35617840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35618087 35618130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35618450 35618475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35618612 35618720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35618923 35618998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35619195 35619310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35619579 35619746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35620684 35620773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35620876 35621022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGGCAGGAAGCTCTCAGCAGAAGCCAGCGCCTCGGAGCCACAACTGGCAGACAGCCTGTGGCGCGGCA
ACCAACCGACTGGGTCTCCAGTAGTCTCTGAGGAGCCGCTCGACCTTCTCCCGACCCTGGATCTGAGGCA
GGAGATGCCTCCCCCGCGGGTGTTCAAGAGCTTTCTGAGCCTGCTCTTCCAGGGGCTGAGCGTGTTGTTA
TCCCTGGCAGGAGACGTGCTGGTCAGCATGTACAGGGAGGTCTGTTCCATCCGCTTCCTGTTCACGGCTG
TGTCGCTGCTGAGCCTCTTTCTGTCAGCATTCTGGCTGGGGCTTCTGTACCTGGTCTCTCCTTTGGAGAA
TGAACCTAAGGAGATGCTGACTCTAAGTGAGTACCACGAGCGCGTGCGCTCCCAGGGGCAGCAGCTGCAG
CAGCTCCAGGCCGAGCTGGATAAACTCCACAAGGAGGTGTCCACTGTTCGGGCAGCCAACAGCGAGAGAG
TGGCCAAGCTCGTGTTCCAGAGGCTGAATGAGGATTTTGTGCGGAAGCCCGACTATGCTTTGAGCTCTGT
GGGAGCCTCCATCGACCTGCAGAAGACATCCCACGATTACGCAGACAGGAACACTGCCTACTTCTGGAAT
CGCTTCAGCTTCTGGAACTACGCACGGCCGCCCACGGTTATCCTGGAGCCCCACGTGTTCCCTGGGAATT
GCTGGGCTTTTGAAGGCGACCAAGGCCAGGTGGTGATCCAACTGCCGGGCCGAGTGCAGCTGAGCGACAT
CACTCTGCAGCATCCACCGCCCAGCGTGGAGCACACCGGAGGAGCCAACAGCGCCCCCCGCGATTTCGCG
GTCTTTGGCCTCCAGGTTTATGATGAAACTGAAGTTTCCTTGGGGAAATTCACCTTCGATGTTGAGAAAT
CGGAGATTCAGACTTTCCACCTGCAGAATGACCCCCCAGCTGCCTTTCCCAAGGTGAAGATCCAGATTCT
AAGCAACTGGGGCCACCCCCGTTTCACGTGCTTGTATCGAGTCCGTGCCCACGGTGTGCGAACCTCAGAG
GGGGCAGAGGGCAGTGCACAGGGGCCCCATTAA

Translation (360 aa):
MGRKLSAEASASEPQLADSLWRGNQPTGSPVVSEEPLDLLPTLDLRQEMPPPRVFKSFLSLLFQGLSVLL
SLAGDVLVSMYREVCSIRFLFTAVSLLSLFLSAFWLGLLYLVSPLENEPKEMLTLSEYHERVRSQGQQLQ
QLQAELDKLHKEVSTVRAANSERVAKLVFQRLNEDFVRKPDYALSSVGASIDLQKTSHDYADRNTAYFWN
RFSFWNYARPPTVILEPHVFPGNCWAFEGDQGQVVIQLPGRVQLSDITLQHPPPSVEHTGGANSAPRDFA
VFGLQVYDETEVSLGKFTFDVEKSEIQTFHLQNDPPAAFPKVKIQILSNWGHPRFTCLYRVRAHGVRTSE
GAEGSAQGPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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