NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86241.1 Public Homo sapiens 11 CCDC82 24 110 108 CCDS HistoryNCBI Gene:79780Re-query CCDS DB by CCDS ID:86241.1Re-query CCDS DB by GeneID:79780See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530106.2 ENSP00000495640.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530106.2Link to Ensembl Protein Viewer:ENSP00000495640.1Re-query CCDS DB by Nucleotide ID:ENST00000530106Re-query CCDS DB by Protein ID:ENSP00000495640
Original member Current member NCBI NM_001318737.3 NP_001305666.1 Accepted alive Link to Nucleotide Sequence:NM_001318737.3Link to Protein Sequence:NP_001305666.1Re-query CCDS DB by Nucleotide ID:NM_001318737Re-query CCDS DB by Protein ID:NP_001305666Link to BLAST:NP_001305666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305666.1 344 Q8N4S0-2 344 100% 0 0

Chromosomal Locations for CCDS 86241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96383225 96383473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96383962 96384747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGATACATGTTAGAAGACATGAAACAAGGAGAAATTCTAAGAGTCACGTGCCTGAGCAGAAATCTCGAG
TTGATTGGAGGCGAACTAAAAGAAGTAGTATCTCACAATTACTTGATAGTGATGAAGAGCTTGATAGTGA
AGAATTTGATAGTGATGAAGAGCTTGATAGTGATGAAAGTTTTGAAAATGATGAAGAGCTTGATAGTAAC
AAGGGACCTGATTGTAATAAAACACCAGGAAGTGAAAGAGAGCTCAACTTAAGTAAAATTCAAAGTGAAG
GAAATGACAGTAAGTGTCTCATTAACTCTGGCAACGGTTCAACATATGAAGAAGAAACGAACAAAATCAA
ACATAGGAATATTGACTTACAAGATCAGGAAAAACATTTAAGTCAAGAGGATAATGATCTCAACAAACAA
ACTGGACAAATAATAGAGGATGATCAGGAAAAACATTTAAGTCAAGAGGATAATGATCTCAACAAACAAA
CTGGACAAATAATAGAGGATGATTTAGAAGAAGAAGACATCAAGCGAGGAAAAAGAAAAAGGCTATCCTC
TGTGATGTGTGACAGTGATGAGAGTGATGACAGCGATATCCTAGTTAGAAAAGTAGGTGTTAAACGTCCC
CGTAGAGTGGTTGAAGATGAAGGTTCTTCAGTGGAAATGGAGCAAAAGACTCCTGAAAAAACATTAGCTG
CACAAAAGCGAGAAAAACTTCAGAAGCTCAAAGAACTCTCAAAACAAAGATCTCGTCAGAGACGCAGTAG
TGGTAGAGATTTTGAGGACTCTGAAAAGGAATCTTGCCCAAGCAGTGATGAAGTTGATGAGGAGGAAGAA
GAGGATAATTATGAATCTGATGAAGATGGAGATGATTATATTATCGATGACTTTGTAGTGCAAGATGAGG
AGGGTGATGAAGAGAATAAAAACCAACAAGGAGAAAAATTGACTACATCACAACTGAAATTAGTAAAACA
GAATTCTCTTTGTAAGTTCAATATTAAGAAAATGTTTCATGAATTGTTCTCATGA

Translation (344 aa):
MIHVRRHETRRNSKSHVPEQKSRVDWRRTKRSSISQLLDSDEELDSEEFDSDEELDSDESFENDEELDSN
KGPDCNKTPGSERELNLSKIQSEGNDSKCLINSGNGSTYEEETNKIKHRNIDLQDQEKHLSQEDNDLNKQ
TGQIIEDDQEKHLSQEDNDLNKQTGQIIEDDLEEEDIKRGKRKRLSSVMCDSDESDDSDILVRKVGVKRP
RRVVEDEGSSVEMEQKTPEKTLAAQKREKLQKLKELSKQRSRQRRSSGRDFEDSEKESCPSSDEVDEEEE
EDNYESDEDGDDYIIDDFVVQDEEGDEENKNQQGEKLTTSQLKLVKQNSLCKFNIKKMFHELFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH