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Report for CCDS4789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4789.1 Public Homo sapiens 6 HMGA1 24 110 108 CCDS HistoryNCBI Gene:3159Re-query CCDS DB by CCDS ID:4789.1Re-query CCDS DB by GeneID:3159See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311487.9 ENSP00000308227.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311487.9Link to Ensembl Protein Viewer:ENSP00000308227.4Re-query CCDS DB by Nucleotide ID:ENST00000311487Re-query CCDS DB by Protein ID:ENSP00000308227
Original member Current member EBI ENST00000447654.5 ENSP00000399888.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447654.5Link to Ensembl Protein Viewer:ENSP00000399888.1Re-query CCDS DB by Nucleotide ID:ENST00000447654Re-query CCDS DB by Protein ID:ENSP00000399888
Original member Current member NCBI NM_001319078.2 NP_001306007.1 Accepted alive Link to Nucleotide Sequence:NM_001319078.2Link to Protein Sequence:NP_001306007.1Re-query CCDS DB by Nucleotide ID:NM_001319078Re-query CCDS DB by Protein ID:NP_001306007Link to BLAST:NP_001306007.1
Original member Current member NCBI NM_001319079.2 NP_001306008.1 Accepted alive Link to Nucleotide Sequence:NM_001319079.2Link to Protein Sequence:NP_001306008.1Re-query CCDS DB by Nucleotide ID:NM_001319079Re-query CCDS DB by Protein ID:NP_001306008Link to BLAST:NP_001306008.1
Original member Current member NCBI NM_001319081.2 NP_001306010.1 Accepted alive Link to Nucleotide Sequence:NM_001319081.2Link to Protein Sequence:NP_001306010.1Re-query CCDS DB by Nucleotide ID:NM_001319081Re-query CCDS DB by Protein ID:NP_001306010Link to BLAST:NP_001306010.1
Original member Current member NCBI NM_001319082.2 NP_001306011.1 Accepted alive Link to Nucleotide Sequence:NM_001319082.2Link to Protein Sequence:NP_001306011.1Re-query CCDS DB by Nucleotide ID:NM_001319082Re-query CCDS DB by Protein ID:NP_001306011Link to BLAST:NP_001306011.1
Original member Current member NCBI NM_145899.3 NP_665906.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145899.3Link to Protein Sequence:NP_665906.1Re-query CCDS DB by Nucleotide ID:NM_145899Re-query CCDS DB by Protein ID:NP_665906Link to BLAST:NP_665906.1
Original member Current member NCBI NM_145901.3 NP_665908.1 Accepted alive Link to Nucleotide Sequence:NM_145901.3Link to Protein Sequence:NP_665908.1Re-query CCDS DB by Nucleotide ID:NM_145901Re-query CCDS DB by Protein ID:NP_665908Link to BLAST:NP_665908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306007.1 107 P17096-1 107 100% 0 0
NP_001306008.1 107 P17096-1 107 100% 0 0
NP_001306010.1 107 P17096-1 107 100% 0 0
NP_001306011.1 107 P17096-1 107 100% 0 0
NP_665906.1 107 P17096-1 107 100% 0 0
NP_665908.1 107 P17096-1 107 100% 0 0

Chromosomal Locations for CCDS 4789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34240781 34240915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34242712 34242795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34243468 34243518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34244831 34244884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGAGTGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGC
GGGGCCGGGGCAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGA
GCCCAGCGAAGTGCCAACACCTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCC
AAGACCCGGAAAACCACCACAACTCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGG
AAGAGGAGGGCATCTCGCAGGAGTCCTCGGAGGAGGAGCAGTGA

Translation (107 aa):
MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAA
KTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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