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Report for CCDS29081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29081.1 Public Mus musculus 18 Dsg1b 23 108 98 CCDS HistoryNCBI Gene:225256Re-query CCDS DB by CCDS ID:29081.1Re-query CCDS DB by GeneID:225256See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076737.6 ENSMUSP00000076026.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076737.6Link to Ensembl Protein Viewer:ENSMUSP00000076026.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076737Re-query CCDS DB by Protein ID:ENSMUSP00000076026
Original member Current member NCBI NM_181682.2 NP_859010.1 Accepted alive Link to Nucleotide Sequence:NM_181682.2Link to Protein Sequence:NP_859010.1Re-query CCDS DB by Nucleotide ID:NM_181682Re-query CCDS DB by Protein ID:NP_859010Link to BLAST:NP_859010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859010.1 1060 Q7TSF1 1060 100% 0 0

Chromosomal Locations for CCDS 29081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 20376935 20376982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20388136 20388171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20388859 20388990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20390134 20390289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20391881 20392025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20394331 20394497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20395893 20396027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20396319 20396504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20397295 20397554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20397859 20397998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20399306 20399644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20404773 20404909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20405220 20405292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20407397 20407605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20408601 20409620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3183 nt):
ATGGACTGGCACTCCTTCAGGATAGCTGCCCTGCTGCTCACTTCCCTGGTGGTGCTTGAAGTTAACAGTG
AATTTCAAATCCAGGTAAGAGATCATAACGCCAAAAATGGTACCATCAAGTGGCACTCCATCAGAAGGCA
GAAAAGAGAATGGATCAAGTTTGCTGCAGCCTGTCGCGAAGGTGAAGACAACTCAAAGAGAAACCCAATT
GCCAAAATTCATTCAGATTGTGCTGCAAACCAACCAGTAACATACCGCATCTCGGGAGTGGGAATTGACC
AGCCACCTTATGGAATCTTCATTATTAACCAAAAAACTGGTGAAATCAATATAACATCCATTGTTGATCG
TGAAGTCACCCCCTTTTTCATTATCTACTGCCGAGCACTGAATGCACAAGGTCAAGACTTGGAGAATCCA
CTGGAGCTTAGAGTCAGAGTGATGGATATAAACGACAACCCTCCTGTGTTTTCAATGACTACATTTCTAG
GACAAATAGAAGAAAATTCTAATGCAAACACACTGGTAATGAAACTCAATGCTACCGATGCCGATGAGCC
AAATAACTTGAACTCAATGATAGCCTTCAAGATCATAAGACAGGAGCCTTCTGACTCACCAATGTTCATC
ATCAACAGGAAAACTGGAGAAATCAGAACAATGAATAACTTTCTAGACAGAGAGCAATATAGCCAGTATT
CCCTTGTGGTGAGAGGCTCAGACCGGGACGGTGGAGCAGACGGCATGTCTGCAGAGAGCGAGTGCAGCAT
CACCATCCTGGATGTCAATGACAACATCCCATACTTGGAGCAGTCATCTTATGACATCGAAATTGAAGAA
AATGCACTTCACTCACAGCTAGTGCAGATCAGAGTCATTGATTTGGATGAAGAATTCTCAGACAACTGGA
AGGCAATCATTTTCTTTATCTCTGGAAATGAGGGAAATTGGTTTGAAATAGAAATGAATGAAAGAACAAA
TGTAGGAACTCTGAAGGTTGTCAAGCCCCTAGATTATGAAGCCATGAAGAATCTACAGCTTAGTATTGGT
GTTCGAAATGTAGCTGAATTCCACCAGTCAATTATTTCTCAATACAGACTCACAGCAACTATGGTCACTG
TGACTGTGTTAAATGTCATCGAGGGCTCTGTGTTCCGTCCAGGTTCAAAGACATTTGTAGTAGACAGTAG
AATGGAAGCAAATCACAGAGTGGGAGAGTTTGTAGCTACAGACCTGGACACAGGTCGAGCTTCCACAAAT
GTTAGATATGAAATGGGAAATAACCCAGAGAACCTGCTGGTTGTTGACTCAAGAACAGGCATAATAACGT
TAAGAAACAGAGTTACTATGGAACAATACCAAAGGCTTAATGGGGAATATAAAGGAACAGTGCTATCAAT
AGATGATTCCCTTCAGAGGACCTGCACGGGGACAATCGTCATTGAACTTAGTGGCACTGGCTGGGTACCA
GGTTCAGATGGTGGTGGCAGTTCCAGTGGCAGTGGTGGTAATCGTGACCCAGTGACTAATGGATATCAAG
GCACTTCTACTGTGGGCCCGCAACGCGTCACAGGATCAGGGGGAGTCACTTCAAGTGGTGGAGGCAGTGG
AGTTAACAACACTCCCGGTAGGCAAAATCCCTTAGACGAACCGGAACCCGAGCCCTTTGACATCACAGAA
GACAACGTTCACTTCGGTCCTGCAGGCATCGGGCTGCTCATCATGGGGTTCCTAGTCTTAGGATTGGTTC
CATTCCTGCTGATCTGCTGTGATTGTGGAGGGGCCCCTGGTGGTGGAGCTGGATTTGAACCTGTTCCAGA
ATGTTCTGATGGAGCAATTCACACGTGGGCCATAGAAGGGCCACAGCCTGAACCCCACGATGGGATAACC
ACCATCTGTGTGCCACAAATGCCACCTGGTAATGCCAATGTTATAGAATATATTGACAACTCAGGAGTTT
ACACAAATGAATATTGTGGCAGAGAAATGCAAGATCTGGGAGGAGGAGAAAGAACCACAGGATTTGAACT
AATGGATGGAGTTAAAACATCAGCTGCACCTGAGATATGCCAAGAATATTCAGGAACATTAAGAAGAAAT
TCAATGAGAGAATGTAGAGATGGGGGTCTCAACATGAATTTCATGGAAAGTTACTTCTGCCAGAAAGCCT
ATGCTTATGCGGATGAAGATGAAGGACGTCCATCCAATGACTGTTTGCTCATCTATGACATCGAAGGTGT
GGGTTCCCCTGCAGGCTCCGTGGGCTGTTGCAGTTTCATTGGAGAAGATCTAGATGAGAGCTTCCTGGAT
ACCTTGGGGCCCAAGTTTAAGAAGTTGGCAGATATCAGCCTGGGAAAAGAAATAGACTCATACCCAGATC
CTGATTCTTCTTGGCCTCCTCAGAGCACTGAACCGATGTGTCCCCAGAGTACAGAGCCCCTGGGTAGTGG
ATATCCACCTATATCCCCACATTTTGGTACGACCACAGTAATTTCTGAGAATGCCTACCCTTCTGGCCCT
GGAGTACAGCATCCTTTGCCAATTCCTGATCCTCTGGGCTATGGCAATGTCACTGTAAGGGAGTCCTATG
CCACCTCTGGCACTCTGAAGCCCTCTGTCCACTTTCATGATAACCAGCAGGCTTCAAATGTGGTGGTGAC
AGAGAGGGTGGTGGGCCCCGTCCCTGGTGCTGATTTGCATGGCATGTTAGAGATACCTGACTTAAGAGAT
GGAACAAATGTTATAGTGACAGAAAGGGTAATAGCACCAGGCTCAAGTCTACCCACTTCTCTGACCATTC
CTAACCCTCGAGAGACCTCAAATGTAGTTGTGACAGAAAGAGTGATCCAACCAACCTCTGGCATGATAGG
CAATCTGAGCATGACCCCTGAGTTATCAAGTGCCCAAAACGTGATTGTGACAGAGAGAGTGGTTTCTGGT
GCTGGTATGAGTGGAATTGCTGGCACTGCCGGGTTAGGTGGGGTTGGAGGCATAGGCAGCAGTGGCCTTG
TTAGCACCACCATGGGTGCTGCTGGCACTGGGCTGAATATGGGAGGAACAGCCACTATTGGCCACATGAG
GAGTTCCTCTGACCATCACTTTAGTCAGACAATTGGATCTGCCTCCCCCAACATGGCTCGAAGTCGAATC
ACAAAGTACAGTACGGTACAGTATAGCAAGTAG

Translation (1060 aa):
MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPI
AKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENP
LELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFI
INRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDIEIEE
NALHSQLVQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAMKNLQLSIG
VRNVAEFHQSIISQYRLTATMVTVTVLNVIEGSVFRPGSKTFVVDSRMEANHRVGEFVATDLDTGRASTN
VRYEMGNNPENLLVVDSRTGIITLRNRVTMEQYQRLNGEYKGTVLSIDDSLQRTCTGTIVIELSGTGWVP
GSDGGGSSSGSGGNRDPVTNGYQGTSTVGPQRVTGSGGVTSSGGGSGVNNTPGRQNPLDEPEPEPFDITE
DNVHFGPAGIGLLIMGFLVLGLVPFLLICCDCGGAPGGGAGFEPVPECSDGAIHTWAIEGPQPEPHDGIT
TICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRN
SMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIGEDLDESFLD
TLGPKFKKLADISLGKEIDSYPDPDSSWPPQSTEPMCPQSTEPLGSGYPPISPHFGTTTVISENAYPSGP
GVQHPLPIPDPLGYGNVTVRESYATSGTLKPSVHFHDNQQASNVVVTERVVGPVPGADLHGMLEIPDLRD
GTNVIVTERVIAPGSSLPTSLTIPNPRETSNVVVTERVIQPTSGMIGNLSMTPELSSAQNVIVTERVVSG
AGMSGIAGTAGLGGVGGIGSSGLVSTTMGAAGTGLNMGGTATIGHMRSSSDHHFSQTIGSASPNMARSRI
TKYSTVQYSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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