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Report for CCDS31839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31839.1 Public Homo sapiens 12 ZBTB39 24 110 108 CCDS HistoryNCBI Gene:9880Re-query CCDS DB by CCDS ID:31839.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300101.3 ENSP00000300101.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300101.3Link to Ensembl Protein Viewer:ENSP00000300101.2Re-query CCDS DB by Nucleotide ID:ENST00000300101Re-query CCDS DB by Protein ID:ENSP00000300101
Original member Current member NCBI NM_014830.3 NP_055645.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014830.3Link to Protein Sequence:NP_055645.1Re-query CCDS DB by Nucleotide ID:NM_014830Re-query CCDS DB by Protein ID:NP_055645Link to BLAST:NP_055645.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055645.1 712 O15060 712 100% 0 0

Chromosomal Locations for CCDS 31839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57002779 57004917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGGGCATGAGGATCAAACTGCAAAGCACCAACCACCCCAACAACCTGCTGAAGGAACTCAACAAGTGCC
GGCTCTCAGAGACCATGTGCGACGTCACCATTGTGGTGGGGAGCCGCTCCTTCCCGGCCCACAAGGCTGT
GCTGGCCTGTGCAGCTGGCTACTTCCAGAACCTCTTCCTGAATACTGGGCTTGATGCTGCCAGGACCTAT
GTGGTGGACTTCATCACCCCTGCCAACTTTGAGAAGGTTCTGAGCTTTGTCTACACTTCAGAACTCTTCA
CAGACCTGATCAATGTTGGGGTCATCTACGAGGTAGCTGAGCGTCTGGGTATGGAGGACCTCCTCCAGGC
CTGTCACTCTACCTTTCCTGATCTGGAGAGCACTGCCAGGGCCAAGCCCCTGACCAGCACCAGTGAGAGC
CACTCTGGTACCCTGAGTTGTCCTTCGGCAGAACCTGCCCATCCCCTTGGAGAACTCCGAGGTGGTGGGG
ACTACCTTGGTGCTGATAGAAACTATGTGTTGCCCAGTGATGCTGGAGGGAGCTATAAAGAGGAAGAGAA
GAATGTTGCCAGTGACGCTAACCATAGCCTGCATCTGCCGCAACCGCCCCCACCACCGCCAAAGACAGAA
GACCATGACACCCCTGCTCCCTTCACGTCCATTCCTAGCATGATGACCCAGCCACTCCTAGGCACTGTCA
GCACGGGCATCCAGACCAGCACGAGCTCCTGCCAGCCATACAAAGTTCAAAGCAATGGAGACTTCAGTAA
AAACAGCTTCCTCACCCCTGACAATGCAGTAGACATTACCACTGGGACCAACTCCTGTCTGAGCAATAGT
GAGCACTCCAAAGATCCTGGCTTTGGGCAGATGGATGAGCTCCAGCTCGAGGACCTGGGGGATGATGACT
TGCAGTTTGAAGACCCTGCTGAGGATATAGGCACAACTGAGGAGGTGATTGAGCTGAGTGATGACAGTGA
GGATGAGTTGGCTTTTGGAGAGAATGACAATCGGGAGAATAAGGCCATGCCCTGCCAGGTGTGCAAGAAA
GTTCTAGAGCCCAACATTCAACTGATCCGGCAGCATGCTCGGGACCATGTGGACCTGCTGACGGGCAACT
GCAAGGTCTGCGAGACCCACTTCCAGGACCGAAACTCCCGGGTAACTCATGTCCTGTCCCACATTGGTAT
TTTCCTTTTCTCCTGCGACATGTGTGAAACTAAGTTCTTTACCCAGTGGCAGCTGACCCTTCACCGACGG
GATGGAATATTTGAGAACAACATCATTGTCCACCCCAACGATCCCCTGCCAGGGAAGCTGGGTCTCTTTT
CAGGGGCAGCCTCCCCAGAGCTGAAATGCGCTGCCTGTGGGAAAGTATTGGCCAAAGATTTCCATGTGGT
CCGGGGCCACATCCTTGACCATCTAAACTTGAAGGGCCAGGCCTGCAGTGTCTGCGACCAGCGTCACCTT
AACCTCTGCAGCCTCATGTGGCACACGCTGTCCCATCTCGGCATCTCAGTCTTCTCCTGTTCTGTCTGTG
CGAACAGCTTTGTGGACTGGCATCTTCTAGAGAAGCACATGGCTGTGCACCAAAGTCTGGAAGACGCCCT
CTTCCACTGCCGCTTGTGCAGCCAGAGCTTCAAGTCAGAGGCTGCCTATCGCTACCACGTCAGCCAGCAC
AAATGCAACAGTGGCCTTGATGCACGGCCTGGTTTTGGGCTGCAGCACCCAGCTCTCCAGAAGCGGAAGC
TGCCAGCAGAGGAGTTTCTGGGTGAAGAGCTGGCGCTGCAGGGCCAACCTGGGAACAGCAAGTATAGCTG
CAAGGTCTGTGGCAAAAGATTTGCCCACACAAGCGAATTCAACTACCACCGGCGGATCCACACGGGGGAG
AAGCCATACCAATGTAAGGTGTGCCACAAGTTCTTTCGAGGCCGCTCGACCATCAAGTGCCACCTAAAGA
CACACTCGGGGGCCCTCATGTACCGCTGCACAGTCTGTGGGCACTACAGTTCCACCCTTAACCTCATGAG
CAAACATGTTGGTGTGCACAAAGGCAGCCTCCCCCCTGACTTCACCATCGAGCAGACCTTCATGTACATC
ATCCATTCCAAAGAGGCGGATAAGAACCCGGACAGTTGA

Translation (712 aa):
MGMRIKLQSTNHPNNLLKELNKCRLSETMCDVTIVVGSRSFPAHKAVLACAAGYFQNLFLNTGLDAARTY
VVDFITPANFEKVLSFVYTSELFTDLINVGVIYEVAERLGMEDLLQACHSTFPDLESTARAKPLTSTSES
HSGTLSCPSAEPAHPLGELRGGGDYLGADRNYVLPSDAGGSYKEEEKNVASDANHSLHLPQPPPPPPKTE
DHDTPAPFTSIPSMMTQPLLGTVSTGIQTSTSSCQPYKVQSNGDFSKNSFLTPDNAVDITTGTNSCLSNS
EHSKDPGFGQMDELQLEDLGDDDLQFEDPAEDIGTTEEVIELSDDSEDELAFGENDNRENKAMPCQVCKK
VLEPNIQLIRQHARDHVDLLTGNCKVCETHFQDRNSRVTHVLSHIGIFLFSCDMCETKFFTQWQLTLHRR
DGIFENNIIVHPNDPLPGKLGLFSGAASPELKCAACGKVLAKDFHVVRGHILDHLNLKGQACSVCDQRHL
NLCSLMWHTLSHLGISVFSCSVCANSFVDWHLLEKHMAVHQSLEDALFHCRLCSQSFKSEAAYRYHVSQH
KCNSGLDARPGFGLQHPALQKRKLPAEEFLGEELALQGQPGNSKYSCKVCGKRFAHTSEFNYHRRIHTGE
KPYQCKVCHKFFRGRSTIKCHLKTHSGALMYRCTVCGHYSSTLNLMSKHVGVHKGSLPPDFTIEQTFMYI
IHSKEADKNPDS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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