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Report for CCDS10123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10123.1 Public Homo sapiens 15 AFG2B 24 110 108 CCDS HistoryNCBI Gene:79029Re-query CCDS DB by CCDS ID:10123.1Re-query CCDS DB by GeneID:79029See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10123.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305560.11 ENSP00000305494.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305560.11Link to Ensembl Protein Viewer:ENSP00000305494.6Re-query CCDS DB by Nucleotide ID:ENST00000305560Re-query CCDS DB by Protein ID:ENSP00000305494
Original member Current member NCBI NM_024063.3 NP_076968.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024063.3Link to Protein Sequence:NP_076968.2Re-query CCDS DB by Nucleotide ID:NM_024063Re-query CCDS DB by Protein ID:NP_076968Link to BLAST:NP_076968.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076968.2 753 Q9BVQ7-1 753 100% 0 0

Chromosomal Locations for CCDS 10123.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 45402430 45403518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45405320 45405505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45410372 45410530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45414571 45414780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45415587 45415779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45417269 45417399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45418557 45418682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45421043 45421210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGGCTCCGGACTCGGATCCCTTCCCTGAAGGGCCGCTCTTAAAGCTGCTACCCTTAGACGCTAGAGACC
GGGGCACCCAGCGCTGCCGCCTGGGCCCGGCCGCCCTCCACGCCCTGGGCGCGCGCTTGGGCTCGGCAGT
GAAGATCTCGCTACCCGACGGCGGCTCCTGCCTCTGCACTGCCTGGCCTCGGCGGGACGGAGCGGACGGC
TTTGTGCAGCTGGACCCGCTGTGCGCGAGCCCCGGGGCGGCGGTCGGGGCGTCGAGATCCCGGAGGAGTC
TCAGCCTGAATCGCCTCCTCCTAGTGCCCTGTCCGCCCCTGCGGCGCGTCGCCGTGTGGCCGGTGTTGCG
AGAGCGGGCAGGCGCGCCCGGTGCCCGGAATACAGCCGCGGTGCTGGAGGCGGCACAGGAGCTGCTGAGA
AACCGACCGATCTCCCTGGGCCACGTGGTGGTCGCTCCGCCAGGCGCTCCTGGCCTGGTGGCTGCCTTGC
ACATCGTCGGCGGGACGCCCAGTCCCGATCCCGCTGGGCTGGTCACCCCTCGTACCCGCGTCAGCCTTGG
CGGGGAGCCTCCGTCGGAAGCCCAGCCGCAGCCCGAGGTGCCCCTGGGAGGTCTTTCGGAGGCGGCCGAC
TCGCTGCGGGAGCTCCTCCGCCTCCCGCTCCGCTACCCGCGCGCCCTGACCGCGCTGGGCTTAGCGGTGC
CTCGCGGGGTGCTCCTGGCGGGGCCCCCCGGAGTGGGCAAGACCCAGCTGGTGCGGGCCGTGGCGCGCGA
GGCGGGCGCGGAGCTGCTGGCAGTCAGCGCCCCGGCGCTGCAGGGTTCCCGGCCTGGGGAGACCGAGGAG
AACGTGCGGCGGGTCTTCCAGCGCGCCCGGGAACTGGCCAGCCGCGGACCCAGCCTCCTCTTCCTGGACG
AGATGGACGCCTTGTGTCCCCAGCGGGGCAGTCGAGCACCCGAGAGCCGCGTAGTGGCCCAGGTGTTGAC
GCTGCTGGACGGCGCCAGTGGGGACCGCGAGGTCGTGGTTGTGGGAGCCACTAACCGGCCGGACGCTCTA
GACCCAGCGCTGCGTAGGCCCGGGAGATTTGACCGAGAGGTGGTCATTGGGACTCCCACACTTAAACAAA
GAAAGGAAATTCTGCAAGTGATTACCTCGAAGATGCCCATCTCCAGTCATGTTGATTTGGGCCTTCTTGC
AGAAATGACAGTTGGCTATGTTGGTGCCGACCTGACAGCACTCTGTAGGGAGGCTGCCATGCATGCCCTC
CTTCATAGTGAGAAGAACCAGGACAATCCTGTGATTGATGAAATAGACTTCCTTGAAGCTTTTAAAAATA
TTCAGCCCTCATCGTTTCGAAGCGTCATTGGATTAATGGATATCAAGCCTGTTGACTGGGAGGAGATTGG
TGGCCTTGAAGATGTAAAACTGAAGTTAAAACAGAGCATTGAGTGGCCTCTGAAATTCCCTTGGGAATTT
GTTAGAATGGGCCTGACACAACCAAAGGGAGTTCTCCTCTATGGGCCCCCTGGATGTGCTAAAACCACTC
TGGTGAGGGCCCTGGCCACAAGCTGTCACTGCTCTTTCGTTTCAGTGAGTGGAGCTGATCTGTTTTCACC
GTTTGTTGGAGATTCAGAAAAAGTGTTGTCTCAGATATTTCGACAAGCAAGAGCAAGCACTCCAGCAATT
TTGTTTTTGGATGAAATTGATTCAATCTTGGGAGCTCGCTCAGCCAGCAAGACAGGATGTGATGTTCAAG
AACGAGTTCTTTCTGTTCTCCTGAATGAATTAGATGGTGTTGGACTTAAGACAATAGAGAGAAGAGGAAG
TAAATCAAGTCAACAGGAGTTTCAAGAAGTTTTTAACCGAAGTGTCATGATTATTGCAGCAACAAATAGA
CCTGATGTGTTAGATACTGCTTTGTTACGACCTGGAAGATTAGATAAGATCATCTATATCCCACCTCCAG
ATCACAAGGGCAGGCTTTCTATTTTAAAAGTCTGTACAAAAACCATGCCAATAGGGCCTGATGTCTCCTT
AGAAAACCTCGCAGCAGAAACCTGTTTTTTTTCTGGAGCTGATCTTAGAAACCTCTGCACAGAAGCTGCT
TTGCTGGCTCTGCAAGAAAATGGACTAGACGCAACTACAGTGAAACAAGAGCACTTTCTAAAATCACTTA
AGACTGTAAAACCGTCGTTAAGTTGCAAGGACTTGGCTTTATATGAAAACTTATTTAAGAAAGAAGGATT
TTCTAACGTGGAAGGTATTTAA

Translation (753 aa):
MAPDSDPFPEGPLLKLLPLDARDRGTQRCRLGPAALHALGARLGSAVKISLPDGGSCLCTAWPRRDGADG
FVQLDPLCASPGAAVGASRSRRSLSLNRLLLVPCPPLRRVAVWPVLRERAGAPGARNTAAVLEAAQELLR
NRPISLGHVVVAPPGAPGLVAALHIVGGTPSPDPAGLVTPRTRVSLGGEPPSEAQPQPEVPLGGLSEAAD
SLRELLRLPLRYPRALTALGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGSRPGETEE
NVRRVFQRARELASRGPSLLFLDEMDALCPQRGSRAPESRVVAQVLTLLDGASGDREVVVVGATNRPDAL
DPALRRPGRFDREVVIGTPTLKQRKEILQVITSKMPISSHVDLGLLAEMTVGYVGADLTALCREAAMHAL
LHSEKNQDNPVIDEIDFLEAFKNIQPSSFRSVIGLMDIKPVDWEEIGGLEDVKLKLKQSIEWPLKFPWEF
VRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAI
LFLDEIDSILGARSASKTGCDVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNR
PDVLDTALLRPGRLDKIIYIPPPDHKGRLSILKVCTKTMPIGPDVSLENLAAETCFFSGADLRNLCTEAA
LLALQENGLDATTVKQEHFLKSLKTVKPSLSCKDLALYENLFKKEGFSNVEGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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