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Report for CCDS10125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10125.1 Public Homo sapiens 15 SLC30A4 24 110 108 CCDS HistoryNCBI Gene:7782Re-query CCDS DB by CCDS ID:10125.1Re-query CCDS DB by GeneID:7782See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261867.5 ENSP00000261867.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261867.5Link to Ensembl Protein Viewer:ENSP00000261867.3Re-query CCDS DB by Nucleotide ID:ENST00000261867Re-query CCDS DB by Protein ID:ENSP00000261867
Original member Current member NCBI NM_013309.6 NP_037441.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013309.6Link to Protein Sequence:NP_037441.2Re-query CCDS DB by Nucleotide ID:NM_013309Re-query CCDS DB by Protein ID:NP_037441Link to BLAST:NP_037441.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037441.2 429 O14863 429 100% 0 0

Chromosomal Locations for CCDS 10125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 45485163 45485317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45486611 45486745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45487527 45487632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45488841 45489042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45490728 45490881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45511138 45511284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45521964 45522354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCCGGCTCTGGCGCGTGGAAGCGCCTCAAATCTATGCTAAGGAAGGATGATGCGCCGCTGTTTTTAA
ATGACACCAGCGCCTTTGACTTCTCGGATGAGGCGGGGGACGAGGGGCTTTCTCGGTTCAACAAACTTCG
AGTTGTGGTGGCCGATGACGGTTCCGAAGCCCCGGAAAGGCCTGTTAACGGGGCGCACCCGACCCTCCAG
GCCGACGATGATTCCTTACTGGACCAAGACTTACCTTTGACCAACAGTCAGCTGAGTTTGAAGGTGGACT
CCTGTGACAACTGCAGCAAACAGAGAGAGATACTGAAGCAGAGAAAGGTGAAAGCCAGGTTGACCATTGC
TGCCGTTCTGTACTTGCTTTTCATGATTGGAGAACTTGTAGGTGGATACATTGCAAATAGCCTAGCAATC
ATGACAGATGCACTTCATATGTTAACTGACCTAAGCGCCATCATACTCACCCTGCTTGCTTTGTGGCTAT
CATCAAAATCACCAACCAAAAGATTCACCTTTGGATTTCATCGCTTAGAGGTTTTGTCAGCTATGATTAG
TGTGCTGTTGGTGTATATACTTATGGGATTCCTCTTATATGAAGCTGTGCAAAGAACTATCCATATGAAC
TATGAAATAAATGGAGATATAATGCTCATCACCGCAGCTGTTGGAGTTGCAGTTAATGTAATAATGGGGT
TTCTGTTGAACCAGTCTGGTCACCGTCACTCCCATTCCCACTCCCTGCCTTCAAATTCCCCTACCAGAGG
TTCTGGGTGTGAACGTAACCATGGGCAGGATAGCCTGGCAGTGAGAGCTGCATTTGTACATGCTTTGGGA
GATTTGGTACAGAGTGTTGGTGTGCTAATAGCTGCATACATCATACGATTCAAGCCAGAATACAAGATTG
CTGACCCCATCTGTACATACGTATTTTCATTACTTGTGGCTTTTACAACATTTCGAATCATATGGGATAC
AGTAGTTATAATACTAGAAGGTGTGCCAAGCCATTTGAATGTAGACTATATCAAAGAAGCCTTGATGAAA
ATAGAAGATGTATATTCAGTCGAAGATTTAAATATCTGGTCTCTCACTTCAGGAAAATCTACTGCCATAG
TTCACATACAGCTAATTCCTGGAAGTTCATCTAAATGGGAGGAAGTACAGTCCAAAGCAAACCATTTATT
ATTGAACACATTTGGCATGTATAGATGTACTATTCAGCTTCAGAGTTACAGGCAAGAAGTGGACAGAACT
TGTGCAAATTGTCAGAGTTCTAGTCCCTAA

Translation (429 aa):
MAGSGAWKRLKSMLRKDDAPLFLNDTSAFDFSDEAGDEGLSRFNKLRVVVADDGSEAPERPVNGAHPTLQ
ADDDSLLDQDLPLTNSQLSLKVDSCDNCSKQREILKQRKVKARLTIAAVLYLLFMIGELVGGYIANSLAI
MTDALHMLTDLSAIILTLLALWLSSKSPTKRFTFGFHRLEVLSAMISVLLVYILMGFLLYEAVQRTIHMN
YEINGDIMLITAAVGVAVNVIMGFLLNQSGHRHSHSHSLPSNSPTRGSGCERNHGQDSLAVRAAFVHALG
DLVQSVGVLIAAYIIRFKPEYKIADPICTYVFSLLVAFTTFRIIWDTVVIILEGVPSHLNVDYIKEALMK
IEDVYSVEDLNIWSLTSGKSTAIVHIQLIPGSSSKWEEVQSKANHLLLNTFGMYRCTIQLQSYRQEVDRT
CANCQSSSP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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