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Report for CCDS10174.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10174.3 Public Homo sapiens 15 BNIP2 24 110 108 CCDS HistoryNCBI Gene:663Re-query CCDS DB by CCDS ID:10174.3Re-query CCDS DB by GeneID:663See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 10174.1
The coding region has been updated to extend the N-terminus based on the presence of an upstream translation start codon, which is conserved in human and Rhesus macaque. A possible downstream start codon, which shows better cross-species conservation, would shorten the protein by 121 aa. The shorter protein is described in the literature, including PMID:7954800. No experimental evidence exists to show which start codon is used in vivo.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10174.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415213.7 ENSP00000412767.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415213.7Link to Ensembl Protein Viewer:ENSP00000412767.3Re-query CCDS DB by Nucleotide ID:ENST00000415213Re-query CCDS DB by Protein ID:ENSP00000412767
Original member Current member EBI ENST00000607373.6 ENSP00000475320.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000607373.6Link to Ensembl Protein Viewer:ENSP00000475320.1Re-query CCDS DB by Nucleotide ID:ENST00000607373Re-query CCDS DB by Protein ID:ENSP00000475320
Original member Current member NCBI NM_001320675.4 NP_001307604.2 Accepted alive Link to Nucleotide Sequence:NM_001320675.4Link to Protein Sequence:NP_001307604.2Re-query CCDS DB by Nucleotide ID:NM_001320675Re-query CCDS DB by Protein ID:NP_001307604Link to BLAST:NP_001307604.2
Original member Current member NCBI NM_004330.4 NP_004321.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004330.4Link to Protein Sequence:NP_004321.3Re-query CCDS DB by Nucleotide ID:NM_004330Re-query CCDS DB by Protein ID:NP_004321Link to BLAST:NP_004321.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307604.2 314 Q12982-1 314 100% 0 0
NP_004321.3 314 Q12982-1 314 100% 0 0

Chromosomal Locations for CCDS 10174.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 59664069 59664120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59668892 59668990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59669276 59669362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59671183 59671314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59672637 59672739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59677911 59678087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59679592 59679768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59680241 59680308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59682408 59682457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAAGGTGTGGAACTTAAAGAAGAATGGCAAGATGAAGATTTTCCGATACCTTTACCAGAAGATGATA
GTATTGAAGCAGATATACTAGCTATAACTGGACCAGAGGACCAGCCTGGCTCACTAGAAGTTAATGGAAA
TAAAGTGAGAAAGAAACTAATGGCTCCAGACATTAGCCTGACACTGGATCCTAGTGATGGCTCTGTATTG
TCAGATGATTTGGATGAAAGTGGGGAGATTGACTTAGATGGCTTAGACACACCGTCAGAGAATAGTAATG
AGTTTGAGTGGGAAGATGATCTTCCAAAACCCAAGACTACTGAAGTAATTAGGAAAGGCTCAATTACTGA
ATACACAGCAGCAGAGGAAAAAGAAGATGGACGACGCTGGCGTATGTTCAGGATTGGAGAACAGGACCAC
AGGGTTGATATGAAGGCAATTGAACCCTATAAAAAAGTTATCAGCCATGGGGGATATTATGGGGATGGAT
TAAATGCCATTGTTGTGTTTGCTGTCTGTTTCATGCCTGAAAGTAGTCAGCCTAACTATAGATACCTGAT
GGACAATCTTTTTAAATATGTTATTGGCACTTTGGAGCTATTAGTAGCAGAAAACTACATGATAGTTTAT
TTAAATGGTGCAACAACTCGAAGAAAAATGCCCAGTCTGGGATGGCTCAGGAAATGTTATCAGCAAATTG
ATAGAAGGTTACGGAAAAATCTAAAATCCCTAATCATTGTACATCCTTCTTGGTTTATCAGAACACTTCT
GGCTGTTACAAGACCATTTATTAGCTCGAAATTCAGCCAAAAAATTAGATACGTGTTTAATTTGGCAGAA
CTAGCAGAACTTGTCCCCATGGAATACGTTGGCATACCAGAATGCATAAAACAAGTTGATCAAGAACTTA
ATGGAAAACAAGATGAACCGAAAAATGAACAGTAA

Translation (314 aa):
MEGVELKEEWQDEDFPIPLPEDDSIEADILAITGPEDQPGSLEVNGNKVRKKLMAPDISLTLDPSDGSVL
SDDLDESGEIDLDGLDTPSENSNEFEWEDDLPKPKTTEVIRKGSITEYTAAEEKEDGRRWRMFRIGEQDH
RVDMKAIEPYKKVISHGGYYGDGLNAIVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVY
LNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAE
LAELVPMEYVGIPECIKQVDQELNGKQDEPKNEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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