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Report for CCDS10223.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10223.2 Public Homo sapiens 15 IQCH 24 110 108 CCDS HistoryNCBI Gene:64799Re-query CCDS DB by CCDS ID:10223.2Re-query CCDS DB by GeneID:64799See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 10223.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data. The previous representation was a candidate for nonsense-mediated mRNA decay (NMD).

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10223.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512104.5 ENSP00000427323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512104.5Link to Ensembl Protein Viewer:ENSP00000427323.1Re-query CCDS DB by Nucleotide ID:ENST00000512104Re-query CCDS DB by Protein ID:ENSP00000427323
Original member Current member NCBI NM_022784.3 NP_073621.2 Accepted alive Link to Nucleotide Sequence:NM_022784.3Link to Protein Sequence:NP_073621.2Re-query CCDS DB by Nucleotide ID:NM_022784Re-query CCDS DB by Protein ID:NP_073621Link to BLAST:NP_073621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073621.2 168 Q86VS3-5 168 100% 0 0

Chromosomal Locations for CCDS 10223.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 67254897 67254947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67261272 67261394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67263122 67263216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67279395 67279512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67304339 67304455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 67306826 67306828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGCACAGAACACTGAAAACCACGACCCTGTCGGATCCATCTTAATCCAGATCCATGAAGACCTTTATC
AGTTAAAGGAGAAATTAACAAAATTCTCACCTGAGGAAAAAGGAGAGACTCTAGACATTCAGAGTCTTGA
AACAGCAATCAAAAGGACTGAAGTGGGGTTAAGAATTCACATTGAGAAGTATTTAAATGTTGTAAACCAG
AATGTATTAACGACTTCTGTTAATGATGAGAGCTTATATACTCCCCAGGCTTCCAAATGGTTACTTCCAA
CTGTAATTGATCAGAAATCATTTATTTTCCCTCAGGAATCTGAGGGTACATTTTGGCAACCCCAAAGACA
GCACAGTTCATCTCTGCCTGTCTTTCCAAGAGCAAAGCGAAAGATAGGGTTGAATGTAAAAATCTTGCAG
GATCCTGAAAACATCCACCACAGAGCTGCTGTAAATGCGAACTATGGAATCAGTTTGCCATATATTAATC
AGAGAAAAGCATGTTAG

Translation (168 aa):
MAQNTENHDPVGSILIQIHEDLYQLKEKLTKFSPEEKGETLDIQSLETAIKRTEVGLRIHIEKYLNVVNQ
NVLTTSVNDESLYTPQASKWLLPTVIDQKSFIFPQESEGTFWQPQRQHSSSLPVFPRAKRKIGLNVKILQ
DPENIHHRAAVNANYGISLPYINQRKAC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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