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Report for CCDS10260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10260.1 Public Homo sapiens 15 ISLR 24 110 108 CCDS HistoryNCBI Gene:3671Re-query CCDS DB by CCDS ID:10260.1Re-query CCDS DB by GeneID:3671See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10260.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249842.8 ENSP00000249842.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000249842.8Link to Ensembl Protein Viewer:ENSP00000249842.3Re-query CCDS DB by Nucleotide ID:ENST00000249842Re-query CCDS DB by Protein ID:ENSP00000249842
Original member Current member EBI ENST00000395118.1 ENSP00000378550.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395118.1Link to Ensembl Protein Viewer:ENSP00000378550.1Re-query CCDS DB by Nucleotide ID:ENST00000395118Re-query CCDS DB by Protein ID:ENSP00000378550
Original member Current member NCBI NM_005545.4 NP_005536.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005545.4Link to Protein Sequence:NP_005536.1Re-query CCDS DB by Nucleotide ID:NM_005545Re-query CCDS DB by Protein ID:NP_005536Link to BLAST:NP_005536.1
Original member Current member NCBI NM_201526.2 NP_958934.1 Accepted alive Link to Nucleotide Sequence:NM_201526.2Link to Protein Sequence:NP_958934.1Re-query CCDS DB by Nucleotide ID:NM_201526Re-query CCDS DB by Protein ID:NP_958934Link to BLAST:NP_958934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005536.1 428 O14498 428 100% 0 0
NP_958934.1 428 O14498 428 100% 0 0

Chromosomal Locations for CCDS 10260.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 74174859 74176145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGCAGGAGCTGCATCTGCTCTGGTGGGCGCTTCTCCTGGGCCTGGCTCAGGCCTGCCCTGAGCCCTGCG
ACTGTGGGGAAAAGTATGGCTTCCAGATCGCCGACTGTGCCTACCGCGACCTAGAATCCGTGCCGCCTGG
CTTCCCGGCCAATGTGACTACACTGAGCCTGTCAGCCAACCGGCTGCCAGGCTTGCCGGAGGGTGCCTTC
AGGGAGGTGCCCCTGCTGCAGTCGCTGTGGCTGGCACACAATGAGATCCGCACGGTGGCCGCCGGAGCCC
TGGCCTCTCTGAGCCATCTCAAGAGCCTGGACCTCAGCCACAATCTCATCTCTGACTTTGCCTGGAGCGA
CCTGCACAACCTCAGTGCCCTCCAATTGCTCAAGATGGACAGCAACGAGCTGACCTTCATCCCCCGCGAC
GCCTTCCGCAGCCTCCGTGCTCTGCGCTCGCTGCAACTCAACCACAACCGCTTGCACACATTGGCCGAGG
GCACCTTCACCCCGCTCACCGCGCTGTCCCACCTGCAGATCAACGAGAACCCCTTCGACTGCACCTGCGG
CATCGTGTGGCTCAAGACATGGGCCCTGACCACGGCCGTGTCCATCCCGGAGCAGGACAACATCGCCTGC
ACCTCACCCCATGTGCTCAAGGGTACGCCGCTGAGCCGCCTGCCGCCACTGCCATGCTCGGCGCCCTCAG
TGCAGCTCAGCTACCAACCCAGCCAGGATGGTGCCGAGCTGCGGCCTGGTTTTGTGCTGGCACTGCACTG
TGATGTGGACGGGCAGCCGGCCCCTCAGCTTCACTGGCACATCCAGATACCCAGTGGCATTGTGGAGATC
ACCAGCCCCAACGTGGGCACTGATGGGCGTGCCCTGCCTGGCACCCCTGTGGCCAGCTCCCAGCCGCGCT
TCCAGGCCTTTGCCAATGGCAGCCTGCTTATCCCCGACTTTGGCAAGCTGGAGGAAGGCACCTACAGCTG
CCTGGCCACCAATGAGCTGGGCAGTGCTGAGAGCTCAGTGGACGTGGCACTGGCCACGCCCGGTGAGGGT
GGTGAGGACACACTGGGGCGCAGGTTCCATGGCAAAGCGGTTGAGGGAAAGGGCTGCTATACGGTTGACA
ACGAGGTGCAGCCATCAGGGCCGGAGGACAATGTGGTCATCATCTACCTCAGCCGTGCTGGGAACCCTGA
GGCTGCAGTCGCAGAAGGGGTCCCTGGGCAGCTGCCCCCAGGCCTGCTCCTGCTGGGCCAAAGCCTCCTC
CTCTTCTTCTTCCTCACCTCCTTCTAG

Translation (428 aa):
MQELHLLWWALLLGLAQACPEPCDCGEKYGFQIADCAYRDLESVPPGFPANVTTLSLSANRLPGLPEGAF
REVPLLQSLWLAHNEIRTVAAGALASLSHLKSLDLSHNLISDFAWSDLHNLSALQLLKMDSNELTFIPRD
AFRSLRALRSLQLNHNRLHTLAEGTFTPLTALSHLQINENPFDCTCGIVWLKTWALTTAVSIPEQDNIAC
TSPHVLKGTPLSRLPPLPCSAPSVQLSYQPSQDGAELRPGFVLALHCDVDGQPAPQLHWHIQIPSGIVEI
TSPNVGTDGRALPGTPVASSQPRFQAFANGSLLIPDFGKLEEGTYSCLATNELGSAESSVDVALATPGEG
GEDTLGRRFHGKAVEGKGCYTVDNEVQPSGPEDNVVIIYLSRAGNPEAAVAEGVPGQLPPGLLLLGQSLL
LFFFLTSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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