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Report for CCDS10277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10277.1 Public Homo sapiens 15 COMMD4 24 110 108 CCDS HistoryNCBI Gene:54939Re-query CCDS DB by CCDS ID:10277.1Re-query CCDS DB by GeneID:54939See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10277.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267935.13 ENSP00000267935.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267935.13Link to Ensembl Protein Viewer:ENSP00000267935.8Re-query CCDS DB by Nucleotide ID:ENST00000267935Re-query CCDS DB by Protein ID:ENSP00000267935
Original member Current member EBI ENST00000480484.5 ENSP00000433662.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000480484.5Link to Ensembl Protein Viewer:ENSP00000433662.1Re-query CCDS DB by Nucleotide ID:ENST00000480484Re-query CCDS DB by Protein ID:ENSP00000433662
Original member Current member NCBI NM_017828.5 NP_060298.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017828.5Link to Protein Sequence:NP_060298.2Re-query CCDS DB by Nucleotide ID:NM_017828Re-query CCDS DB by Protein ID:NP_060298Link to BLAST:NP_060298.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060298.2 199 Q9H0A8-1 199 100% 0 0

Chromosomal Locations for CCDS 10277.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75336090 75336092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75338062 75338133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75338355 75338420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75338646 75338685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75338985 75339104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75339264 75339344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75339702 75339878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75339965 75340005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGAGGTTCCGGTTCTGTGGTGATCTGGACTGTCCCGACTGGGTCCTGGCAGAAATCAGCACGCTGGCCA
AGATGTCCTCTGTGAAGTTGCGGCTGCTCTGCAGCCAGGTACTAAAGGAGCTGCTGGGACAGGGGATTGA
TTATGAGAAGATCCTGAAGCTCACGGCTGACGCCAAGTTTGAGTCAGGCGATGTGAAGGCCACAGTGGCA
GTGCTGAGTTTCATCCTCTCCAGTGCGGCCAAGCACAGTGTCGATGGCGAATCCTTGTCCAGTGAACTGC
AGCAGCTGGGGCTGCCCAAAGAGCACGCGGCCAGCCTGTGCCGCTGTTATGAGGAGAAGCAAAGCCCCTT
GCAGAAGCACTTGCGGGTCTGCAGCCTACGCATGAATAGGTTGGCAGGTGTGGGCTGGCGGGTGGACTAC
ACCCTGAGCTCCAGCCTGCTGCAATCCGTGGAAGAGCCCATGGTGCACCTGCGGCTGGAGGTGGCAGCTG
CCCCAGGGACCCCAGCCCAGCCTGTTGCCATGTCCCTCTCAGCAGACAAGTTCCAGGTCCTCCTGGCAGA
ACTGAAGCAGGCCCAGACCCTGATGAGCTCCCTGGGCTGA

Translation (199 aa):
MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVA
VLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDY
TLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAELKQAQTLMSSLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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