NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10281.1 Public Homo sapiens 15 SNUPN 24 110 108 CCDS HistoryNCBI Gene:10073Re-query CCDS DB by CCDS ID:10281.1Re-query CCDS DB by GeneID:10073See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10281.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308588.10 ENSP00000309831.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308588.10Link to Ensembl Protein Viewer:ENSP00000309831.5Re-query CCDS DB by Nucleotide ID:ENST00000308588Re-query CCDS DB by Protein ID:ENSP00000309831
Original member Current member EBI ENST00000564644.5 ENSP00000454852.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564644.5Link to Ensembl Protein Viewer:ENSP00000454852.1Re-query CCDS DB by Nucleotide ID:ENST00000564644Re-query CCDS DB by Protein ID:ENSP00000454852
Original member Current member EBI ENST00000567134.5 ENSP00000456224.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000567134.5Link to Ensembl Protein Viewer:ENSP00000456224.1Re-query CCDS DB by Nucleotide ID:ENST00000567134Re-query CCDS DB by Protein ID:ENSP00000456224
Original member Current member EBI ENST00000564675.5 ENSP00000458053.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564675.5Link to Ensembl Protein Viewer:ENSP00000458053.1Re-query CCDS DB by Nucleotide ID:ENST00000564675Re-query CCDS DB by Protein ID:ENSP00000458053
Original member Current member NCBI NM_001042581.2 NP_001036046.1 Accepted alive Link to Nucleotide Sequence:NM_001042581.2Link to Protein Sequence:NP_001036046.1Re-query CCDS DB by Nucleotide ID:NM_001042581Re-query CCDS DB by Protein ID:NP_001036046Link to BLAST:NP_001036046.1
Original member Current member NCBI NM_001042588.2 NP_001036053.1 Accepted alive Link to Nucleotide Sequence:NM_001042588.2Link to Protein Sequence:NP_001036053.1Re-query CCDS DB by Nucleotide ID:NM_001042588Re-query CCDS DB by Protein ID:NP_001036053Link to BLAST:NP_001036053.1
Original member Current member NCBI NM_005701.4 NP_005692.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005701.4Link to Protein Sequence:NP_005692.1Re-query CCDS DB by Nucleotide ID:NM_005701Re-query CCDS DB by Protein ID:NP_005692Link to BLAST:NP_005692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036046.1 360 O95149 360 100% 0 0
NP_001036053.1 360 O95149 360 100% 0 0
NP_005692.1 360 O95149 360 100% 0 0

Chromosomal Locations for CCDS 10281.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75598358 75598681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75601138 75601218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75605150 75605227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75607216 75607313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75609558 75609651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75609890 75609994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75617408 75617552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75620894 75621051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGAAGAGTTGAGTCAGGCCCTGGCTAGTAGCTTTTCTGTGTCTCAAGATCTGAACAGCACAGCTGCCC
CACACCCCCGCCTATCCCAGTACAAGTCCAAGTACAGTTCCTTGGAGCAGAGTGAGCGCCGCCGGAGGTT
ACTGGAACTGCAGAAATCCAAGCGGCTGGATTATGTGAACCATGCCAGAAGACTGGCTGAAGATGACTGG
ACAGGGATGGAGAGTGAGGAAGAAAATAAGAAAGATGATGAAGAAATGGACATTGACACTGTCAAGAAGT
TACCAAAACACTATGCTAATCAATTGATGCTTTCTGAGTGGTTAATTGACGTTCCTTCAGATTTGGGGCA
GGAATGGATTGTGGTCGTGTGCCCTGTTGGAAAAAGAGCCCTTATCGTGGCCTCCAGGGGTTCTACCAGT
GCCTACACCAAGAGTGGCTACTGTGTCAACAGGTTTTCTTCACTTCTGCCAGGAGGCAACAGGCGAAACT
CAACAGCAAAAGACTACACCATTCTAGATTGCATTTACAATGAGGTAAACCAGACCTACTACGTTCTGGA
TGTGATGTGCTGGCGGGGACACCCTTTTTATGATTGCCAGACTGATTTCCGATTCTACTGGATGCATTCA
AAGTTACCAGAAGAAGAAGGACTGGGAGAGAAAACCAAGCTTAATCCTTTTAAATTTGTGGGGCTAAAGA
ACTTCCCTTGCACTCCCGAAAGCCTGTGTGATGTGCTATCTATGGATTTCCCTTTTGAGGTAGATGGACT
TCTCTTCTACCACAAACAGACCCACTACAGCCCCGGAAGCACTCCCTTGGTGGGCTGGCTGCGCCCCTAC
ATGGTGTCAGATGTCCTTGGTGTAGCTGTGCCGGCTGGCCCGCTGACCACCAAGCCAGACTATGCTGGGC
ACCAGCTCCAGCAGATTATGGAGCACAAGAAGAGCCAGAAGGAAGGCATGAAGGAGAAACTCACACACAA
GGCCTCTGAGAATGGGCACTATGAATTGGAGCACCTGTCTACTCCCAAGTTGAAGGGTTCTTCCCATAGC
CCAGACCACCCTGGATGCCTCATGGAGAATTAA

Translation (360 aa):
MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDW
TGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTS
AYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHS
KLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPY
MVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHS
PDHPGCLMEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH