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Report for CCDS10335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10335.1 Public Homo sapiens 15 SLC28A1 24 110 108 CCDS HistoryNCBI Gene:9154Re-query CCDS DB by CCDS ID:10335.1Re-query CCDS DB by GeneID:9154See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338602.6 ENSP00000341629.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338602.6Link to Ensembl Protein Viewer:ENSP00000341629.2Re-query CCDS DB by Nucleotide ID:ENST00000338602Re-query CCDS DB by Protein ID:ENSP00000341629
Original member Current member NCBI NM_201651.3 NP_964014.1 Accepted alive Link to Nucleotide Sequence:NM_201651.3Link to Protein Sequence:NP_964014.1Re-query CCDS DB by Nucleotide ID:NM_201651Re-query CCDS DB by Protein ID:NP_964014Link to BLAST:NP_964014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_964014.1 175 O00337-2 175 100% 0 0

Chromosomal Locations for CCDS 10335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84887761 84887856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84888772 84888860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84890443 84890534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84894940 84895123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84895378 84895444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGAGAACGACCCCTCGAGACGAAGAGAGTCCATCTCTCTCACACCTGTGGCCAAGGGTCTGGAGAACA
TGGGGGCTGATTTCTTGGAAAGCCTGGAGGAAGGCCAGCTCCCTAGGAGTGACTTGAGCCCCGCAGAGAT
CAGGAGCAGCTGGAGCGAGGCGGCGCCGAAGCCCTTCTCCAGATGGAGGAACCTGCAGCCAGCCCTGAGA
GCCAGAAGCTTCTGCAGGGAGCACATGCAGCTGTTTCGATGGATCGGCACAGGCCTGCTCTGCACTGGGC
TCTCTGCCTTCCTGCTGGTGGCCTGCCTCCTGGATTTCCAGAGGGCCCTGGCTCTGTTTGTCCTCACCTG
TGTGGTCCTCACCTTCCTGGGCCACCGCCTGCTGAAACGGCTTCTGGGGCCAAAGCTGAGGAGGTTTCTC
AAGCCTCAGGGCCATCCCCGCCTGCTGCTCTGGTTTAAGAGGGATCCCAGGCCATGGAGCAAGGAGGGCC
CGAATCAGTACCTCCCTCAGATCACCTGGACAGTGTGA

Translation (175 aa):
MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFSRWRNLQPALR
ARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVLTFLGHRLLKRLLGPKLRRFL
KPQGHPRLLLWFKRDPRPWSKEGPNQYLPQITWTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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