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Report for CCDS10354.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10354.1 Public Homo sapiens 15 PEX11A 24 110 108 CCDS HistoryNCBI Gene:8800Re-query CCDS DB by CCDS ID:10354.1Re-query CCDS DB by GeneID:8800See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10354.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300056.8 ENSP00000300056.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300056.8Link to Ensembl Protein Viewer:ENSP00000300056.3Re-query CCDS DB by Nucleotide ID:ENST00000300056Re-query CCDS DB by Protein ID:ENSP00000300056
Original member Current member NCBI NM_003847.3 NP_003838.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003847.3Link to Protein Sequence:NP_003838.1Re-query CCDS DB by Nucleotide ID:NM_003847Re-query CCDS DB by Protein ID:NP_003838Link to BLAST:NP_003838.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003838.1 247 O75192-1 247 100% 0 0

Chromosomal Locations for CCDS 10354.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89683377 89683948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89686431 89686546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89690577 89690632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGACGCCTTCACCCGCTTCACCAACCAGACCCAGGGCCGGGACCGACTCTTCAGAGCCACTCAGTACA
CATGCATGTTGCTTAGATATTTGTTAGAGCCCAAAGCTGGCAAAGAGAAGGTGGTAATGAAGCTCAAGAA
ACTGGAGTCCAGTGTGAGCACTGGTCGTAAATGGTTCAGACTAGGCAATGTGGTACATGCTATACAGGCA
ACTGAGCAGAGCATTCATGCCACTGACCTGGTACCTCGCTTATGCTTAACATTAGCCAACCTGAACCGTG
TGATTTATTTCATCTGTGACACCATCCTCTGGGTGAGGAGCGTAGGTCTCACCTCTGGCATCAACAAAGA
GAAATGGCGAACGAGGGCTGCTCACCACTACTACTATTCTCTTCTGCTGAGCCTGGTCAGGGATCTGTAT
GAAATCTCCCTGCAGATGAAACGAGTTACATGTGACAGGGCAAAGAAAGAGAAATCAGCATCCCAGGATC
CTCTTTGGTTCAGCGTGGCTGAGGAGGAAACAGAATGGCTCCAATCCTTTCTACTTCTTTTATTCCGATC
TCTGAAGCAGCATCCTCCCTTGCTCCTGGACACAGTGAAGAACCTTTGTGATATCCTGAACCCTTTGGAC
CAGCTGGGGATCTATAAATCCAATCCTGGCATCATTGGACTTGGAGGTCTTGTGTCCTCTATAGCAGGCA
TGATCACTGTGGCATATCCTCAGATGAAGCTGAAGACCCGTTAG

Translation (247 aa):
MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFRLGNVVHAIQA
TEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWRTRAAHHYYYSLLLSLVRDLY
EISLQMKRVTCDRAKKEKSASQDPLWFSVAEEETEWLQSFLLLLFRSLKQHPPLLLDTVKNLCDILNPLD
QLGIYKSNPGIIGLGGLVSSIAGMITVAYPQMKLKTR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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