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Report for CCDS10385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10385.1 Public Homo sapiens 15 LINS1 24 110 108 CCDS HistoryNCBI Gene:55180Re-query CCDS DB by CCDS ID:10385.1Re-query CCDS DB by GeneID:55180See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10385.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314742.13 ENSP00000318423.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314742.13Link to Ensembl Protein Viewer:ENSP00000318423.8Re-query CCDS DB by Nucleotide ID:ENST00000314742Re-query CCDS DB by Protein ID:ENSP00000318423
Original member Current member NCBI NM_001040616.3 NP_001035706.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040616.3Link to Protein Sequence:NP_001035706.2Re-query CCDS DB by Nucleotide ID:NM_001040616Re-query CCDS DB by Protein ID:NP_001035706Link to BLAST:NP_001035706.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035706.2 757 Q8NG48-1 757 100% 0 0

Chromosomal Locations for CCDS 10385.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 100569238 100570117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100571894 100572065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100573651 100574241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100574987 100575128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100580263 100580352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 100580444 100580842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGAAAGTTTTCTGTGAAGTTTTAGAAGAGTTATACAAGAAGGTACTTCTTGGAGCCACACTTGAAAATG
ACAGCCATGATTACATCTTTTATCTCAACCCAGCAGTTTCAGATCAAGATTGTTCTACAGCCACCTCCTT
AGAATGGGCAAACACCTGTGGTATCCAGGGCAGGCATCAGCCCATCTCTGTTGGTGTGGCTCCCATTGCT
GTAGCACCTGTGTGTTTGAAGACCAACTCTCAGATGAGCGGTTCCAGAGAAGTAATGCTCCTTCAGTTAA
CAGTGATCAAAGTGATGACAACCCGGATATTGTCTGTCAAAACCGAGTTCCATGCAAAGGAGCAGTACAG
AGATGTAATTAAAATTCTCTTAGAATCAGCCAAAGTCGATTCTAAATTAATCTGCATGTTCCAAAATTCA
GATAAATTGTTATCTCACATGGCTGCACAGTGCCTTGCATTGCTTCTATATTTCCAATTGAGAGAAAAGA
TAACCTTAAGTAATTCCTGGATTGCTTTTTGCCAGAAAAATCTTTCTGAATACTCTGAGAGTAATAAAGC
AATATACTGCCTCTGGACTCTTACAGCAATAATAAAAGAAATCTTTAAAGATTCATGTTCACAGAAAACA
GAAATTCTAAAGCAGTTCCTGACTCATTTCGACACCATTTTTGAAGTGTTTTACAATTCCTTATTCTCTC
AGCATTTTGAAAACTGCCGGGATACTTCTAAAATAGTAAACATCCTGATGTGTTTCCTGGATTTGCTTGA
GCTTCTCATCGCCTCCAGAATCCACCTGAAGTTACATTTCACTTGCCAGAGGATTTTATTTTTGAAACCA
TCTTGCATGCTAGAAGTTATTACCTGGCCTATTCAGGCTTTTGTTAAAAGGAAGGTCATCATATTCCTCA
AAAAGTGCCTTCTCTGTAAAGTGGGTGAAGACCTCTGTCGTGGATCTGTGCCTGCCTTAATGCCGCCAGA
CCATCATGTAGCGGTGGACATGCTGGCTTTAGCTAATGCTGTTTTGCAAGCTGTGAATTCGGGGTTGTTG
AAGACACTGTCTGTTTATGAAAAACATTCCTTTTTTGGAGGTGATGAAGTTCAACCTGAATGTGAACTTA
TCACTAGTCCAGATCATGTGATCCTTAGAGCAGCAAGCTTAGTTATAATGAAATCCTTAGAAATCAAGTT
TCAAAATTATTCTTCAGCAAGTGAAGTGAAAGTTGACTTACAGAGGTTCATGTCTGAGTTACTGACCTTC
TTAAAGCCTCATCTTCAGCCCTCTCTGCAATTACACAATCCGTGCAAATGGCTGTCTCGGGTTTTCATAG
AACAAGACGATGACATGCTGGAGGCTGCCAAGGCATCACTGGGCATCTACTTAACACTGACCAGAGGATG
TGAAGCCACTGAAAGCTTGACTCAGGGAAAAGAAATGTGGGACCATCACACACATGAAAATGGCTATAAT
CCTCACTGTATTTTCTTGTTCTTCTTGAAAAATATAGGATTTGATTCCACAGTTCTTCTTGACTTTTTGA
TTTCATCAGAAACCTGTTTTCTTGAATATTTTGTTAGATATTTAAAATTACTGCAAAAGGACTGGGATAA
TTTTTTCACCATTTGCAATAACTTTGATGCAACTGAATCTAAATATGACATAAGTATTTGTGGCTGTGTC
CCCTCACTTGTCCAAGACCAAAGCTCCAACCAAACAATACCCCATCGTTTGACTGCTCCTCATAGTCACA
GAGATGTGTGTGCTCGGCACTCCTGGGCTTCCGATGCTCCCTCTGAACCACTGAAAGCTGTGATGTCCAA
GGGGGCTCACACCATGTGTGCTTCTAGTCTGTCTTCCCCCCGGGCCTCTCAAAGTCTGGTAGATTACGAC
AGCTCTGACGATTCTGACGTGGAATCCACAGAGCAGTGTTTAGCTAACAGTAAACAGACATCTTTACACC
AGCAAGCAACTAAGGAGATTCAGGATGCAGCTGGGACAAGCAGGGATAAAAAAGAATTTAGCCTTGAGCC
TCCATCAAGGCCTCTGGTTCTGAAAGAATTTGATACTGCCTTCTCCTTTGATTGTGAAGTAGCCCCAAAT
GATGTCGTCTCTGAAGTGGGAATATTTTACAGAATAGTAAAATGCTTCCAGGAACTACAAGATGCCATCT
GCCGTTTGCAAAAGAAAAATCTTTTCCCATATAATCCAACTGCACTTTTGAAGTTGTTAAAATACATAGA
GGTGATAAGTAATAAAACTATGAACACTTTGTAA

Translation (757 aa):
MKVFCEVLEELYKKVLLGATLENDSHDYIFYLNPAVSDQDCSTATSLEWANTCGIQGRHQPISVGVAPIA
VAPVCLKTNSQMSGSREVMLLQLTVIKVMTTRILSVKTEFHAKEQYRDVIKILLESAKVDSKLICMFQNS
DKLLSHMAAQCLALLLYFQLREKITLSNSWIAFCQKNLSEYSESNKAIYCLWTLTAIIKEIFKDSCSQKT
EILKQFLTHFDTIFEVFYNSLFSQHFENCRDTSKIVNILMCFLDLLELLIASRIHLKLHFTCQRILFLKP
SCMLEVITWPIQAFVKRKVIIFLKKCLLCKVGEDLCRGSVPALMPPDHHVAVDMLALANAVLQAVNSGLL
KTLSVYEKHSFFGGDEVQPECELITSPDHVILRAASLVIMKSLEIKFQNYSSASEVKVDLQRFMSELLTF
LKPHLQPSLQLHNPCKWLSRVFIEQDDDMLEAAKASLGIYLTLTRGCEATESLTQGKEMWDHHTHENGYN
PHCIFLFFLKNIGFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDNFFTICNNFDATESKYDISICGCV
PSLVQDQSSNQTIPHRLTAPHSHRDVCARHSWASDAPSEPLKAVMSKGAHTMCASSLSSPRASQSLVDYD
SSDDSDVESTEQCLANSKQTSLHQQATKEIQDAAGTSRDKKEFSLEPPSRPLVLKEFDTAFSFDCEVAPN
DVVSEVGIFYRIVKCFQELQDAICRLQKKNLFPYNPTALLKLLKYIEVISNKTMNTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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