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Report for CCDS10401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10401.1 Public Homo sapiens 16 LUC7L 24 110 108 CCDS HistoryNCBI Gene:55692Re-query CCDS DB by CCDS ID:10401.1Re-query CCDS DB by GeneID:55692See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337351.8 ENSP00000337507.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337351.8Link to Ensembl Protein Viewer:ENSP00000337507.4Re-query CCDS DB by Nucleotide ID:ENST00000337351Re-query CCDS DB by Protein ID:ENSP00000337507
Original member Current member EBI ENST00000397783.5 ENSP00000380885.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397783.5Link to Ensembl Protein Viewer:ENSP00000380885.1Re-query CCDS DB by Nucleotide ID:ENST00000397783Re-query CCDS DB by Protein ID:ENSP00000380885
Original member Current member NCBI NM_001320226.2 NP_001307155.1 Accepted alive Link to Nucleotide Sequence:NM_001320226.2Link to Protein Sequence:NP_001307155.1Re-query CCDS DB by Nucleotide ID:NM_001320226Re-query CCDS DB by Protein ID:NP_001307155Link to BLAST:NP_001307155.1
Original member Current member NCBI NM_018032.5 NP_060502.1 Accepted alive Link to Nucleotide Sequence:NM_018032.5Link to Protein Sequence:NP_060502.1Re-query CCDS DB by Nucleotide ID:NM_018032Re-query CCDS DB by Protein ID:NP_060502Link to BLAST:NP_060502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307155.1 325 Q9NQ29-2 325 100% 0 0
NP_060502.1 325 Q9NQ29-2 325 100% 0 0

Chromosomal Locations for CCDS 10401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 189964 190135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 190541 190570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 192927 193015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 199062 199238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 206004 206147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 208078 208188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 220649 220747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 227242 227336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 229279 229339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGTCCGCCCAGGCGCAGATGCGGGCCCTGCTGGACCAGCTCATGGGCACGGCTCGGGACGGAGACGAAA
CCAGACAGAGGGTCAAGTTTACAGATGACCGTGTCTGCAAGAGTCACCTTCTGGACTGCTGCCCCCATGA
CATCCTGGCTGGGACGCGCATGGATTTAGGAGAATGTACCAAAATCCACGACTTGGCCCTCCGAGCAGAT
TATGAGATTGCAAGTAAAGAAAGAGACCTGTTTTTTGAATTAGATGCAATGGATCACTTGGAGTCCTTTA
TTGCTGAATGTGATCGGAGAACTGAGCTCGCCAAGAAGCGGCTGGCAGAAACACAGGAGGAAATCAGTGC
GGAAGTTTCTGCAAAGGCAGAAAAAGTACATGAGTTAAATGAAGAAATAGGAAAACTCCTTGCTAAAGCC
GAACAGCTAGGGGCTGAAGGTAATGTGGATGAATCCCAGAAGATTCTTATGGAAGTGGAAAAAGTTCGTG
CGAAGAAAAAAGAAGCTGAGGAAGAATACAGAAATTCCATGCCTGCATCCAGTTTTCAGCAGCAAAAGCT
GCGTGTCTGCGAGGTCTGTTCAGCCTACCTTGGTCTCCATGACAATGACCGTCGCCTGGCAGACCACTTC
GGTGGCAAGTTACACTTGGGGTTCATTCAGATCCGAGAGAAGCTTGATCAGTTGAGGAAAACTGTCGCTG
AAAAGCAGGAGAAGAGAAATCAGGATCGCTTGAGGAGGAGAGAGGAGAGGGAACGGGAGGAGCGTCTGAG
CAGGAGGTCGGGATCAAGAACCAGAGATCGCAGGAGGTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCA
AGATCTACCTCCCGAGAGCGACGGAAATTGTCCCGGTCCCGGTCCCGAGATAGACATCGGCGCCACCGCA
GCCGTTCCCGGAGCCACAGCCGGGGACATCGTCGGGCTTCCCGGGACCGAAGTGCGAAATACAAGTAA

Translation (325 aa):
MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLALRAD
YEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKA
EQLGAEGNVDESQKILMEVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHF
GGKLHLGFIQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLSRRSGSRTRDRRRSRSRDRRRRRS
RSTSRERRKLSRSRSRDRHRRHRSRSRSHSRGHRRASRDRSAKYK


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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