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Report for CCDS10426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10426.1 Public Homo sapiens 16 RPUSD1 24 110 108 CCDS HistoryNCBI Gene:113000Re-query CCDS DB by CCDS ID:10426.1Re-query CCDS DB by GeneID:113000See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10426.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000007264.7 ENSP00000007264.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000007264.7Link to Ensembl Protein Viewer:ENSP00000007264.2Re-query CCDS DB by Nucleotide ID:ENST00000007264Re-query CCDS DB by Protein ID:ENSP00000007264
Original member Current member EBI ENST00000561734.5 ENSP00000455026.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561734.5Link to Ensembl Protein Viewer:ENSP00000455026.1Re-query CCDS DB by Nucleotide ID:ENST00000561734Re-query CCDS DB by Protein ID:ENSP00000455026
Original member Current member NCBI NM_058192.3 NP_478072.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_058192.3Link to Protein Sequence:NP_478072.1Re-query CCDS DB by Nucleotide ID:NM_058192Re-query CCDS DB by Protein ID:NP_478072Link to BLAST:NP_478072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_478072.1 312 Q9UJJ7 312 100% 0 0

Chromosomal Locations for CCDS 10426.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 785950 786377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 786827 786928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 787077 787179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 787354 787477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 787556 787737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGCCAGGCAGCGTGGAGAACCTGTCCATCGTGTACCGGAGCCGCGACTTCCTGGTGGTCAACAAGC
ACTGGGACGTTCGCATTGACAGCAAGGCGTGGCGGGAGACTCTGACCCTGCAGAAGCAGCTGCGGTACCG
CTTTCCCGAGCTGGCCGACCCTGACACCTGCTACGGGTTCAGGTTCTGCCACCAGCTGGATTTCTCCACC
AGCGGGGCGCTGTGCGTGGCCCTAAACAAGGCAGCCGCCGGCAGCGCGTACAGGTGCTTCAAGGAGCGGC
GCGTGACCAAGGCTTACCTGGCATTGCTGCGGGGGCACATCCAGGAGAGCCGGGTAACCATCAGCCATGC
CATTGGCAGGAACAGCACGGAGGGCCGGGCCCACACCATGTGCATCGAGGGCTCGCAGGGTTGTGAGAAC
CCAAAGCCAAGCCTCACAGATCTCGTGGTTCTGGAACACGGGCTGTACGCAGGCGATCCTGTCTCCAAAG
TGCTGCTGAAGCCGCTCACGGGCCGGACACACCAGCTGCGCGTGCACTGCAGTGCCCTGGGCCACCCCGT
GGTGGGCGACCTGACCTACGGAGAAGTCTCGGGCCGGGAGGACCGGCCGTTCAGAATGATGCTGCACGCT
TTCTACCTGCGCATCCCCACGGACACCGAGTGTGTGGAGGTCTGCACGCCTGACCCCTTCCTGCCCTCCC
TGGATGCCTGCTGGAGCCCCCACACACTGCTGCAGTCGCTGGACCAGCTCGTGCAGGCCTTACGGGCCAC
CCCCGACCCTGACCCCGAGGATAGGGGCCCCAGGCCAGGCAGCCCCTCCGCACTCCTGCCTGGGCCCGGC
CGGCCTCCTCCACCCCCAACCAAGCCCCCTGAGACTGAGGCACAGCGGGGCCCCTGCCTGCAGTGGCTGT
CGGAGTGGACGCTGGAACCGGACAGCTGA

Translation (312 aa):
MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDFST
SGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRNSTEGRAHTMCIEGSQGCEN
PKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDRPFRMMLHA
FYLRIPTDTECVEVCTPDPFLPSLDACWSPHTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPG
RPPPPPTKPPETEAQRGPCLQWLSEWTLEPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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