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Report for CCDS10448.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10448.2 Public Homo sapiens 16 FAHD1 24 110 108 CCDS HistoryNCBI Gene:81889Re-query CCDS DB by CCDS ID:10448.2Re-query CCDS DB by GeneID:81889See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10448.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427358.5 ENSP00000398053.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000427358.5Link to Ensembl Protein Viewer:ENSP00000398053.3Re-query CCDS DB by Nucleotide ID:ENST00000427358Re-query CCDS DB by Protein ID:ENSP00000398053
Original member Current member NCBI NM_031208.4 NP_112485.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031208.4Link to Protein Sequence:NP_112485.2Re-query CCDS DB by Nucleotide ID:NM_031208Re-query CCDS DB by Protein ID:NP_112485Link to BLAST:NP_112485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112485.2 221 Q6P587-4 221 100% 0 0

Chromosomal Locations for CCDS 10448.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1827239 1827904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGCAGCATCCAGGCCATTGTCCCGCTTCTGGGAGTGGGGAAAGAACATCGTCTGCGTGGGGAGGAACT
ACGCGGACCACGTCAGGGAGATGCGCAGCGCGGTGTTGAGCGAGCCCGTGCTGTTCCTGAAGCCGTCCAC
GGCCTACGCGCCCGAGGGCTCGCCCATCCTCATGCCCGCGTACACTCGCAACCTGCACCACGAGCTGGAG
CTGGGCGTGGTGATGGGCAAGCGCTGCCGCGCAGTCCCCGAGGCTGCGGCCATGGACTACGTGGGCGGCT
ATGCCCTGTGCCTGGATATGACCGCCCGGGACGTGCAGGACGAGTGCAAGAAGAAGGGGCTGCCCTGGAC
TCTGGCGAAGAGCTTCACGGCGTCCTGCCCGGTCAGCGCGTTCGTGCCCAAGGAGAAGATCCCTGACCCT
CACAAGCTGAAGCTCTGGCTCAAGGTCAACGGCGAACTCAGACAGGAGGGTGAGACATCCTCCATGATTT
TTTCCATCCCCTACATCATCAGCTATGTTTCTAAGATCATAACCTTGGAAGAAGGAGATATTATCTTGAC
TGGGACGCCAAAGGGAGTTGGACCGGTTAAAGAAAACGATGAGATCGAGGCTGGCATACACGGGCTGGTC
AGTATGACATTTAAAGTGGAAAAGCCAGAATATTGA

Translation (221 aa):
MAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELE
LGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDP
HKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLV
SMTFKVEKPEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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