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Report for CCDS10465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10465.1 Public Homo sapiens 16 RNPS1 24 110 108 CCDS HistoryNCBI Gene:10921Re-query CCDS DB by CCDS ID:10465.1Re-query CCDS DB by GeneID:10921See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10465.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301730.12 ENSP00000301730.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301730.12Link to Ensembl Protein Viewer:ENSP00000301730.8Re-query CCDS DB by Nucleotide ID:ENST00000301730Re-query CCDS DB by Protein ID:ENSP00000301730
Original member Current member EBI ENST00000320225.10 ENSP00000315859.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320225.10Link to Ensembl Protein Viewer:ENSP00000315859.5Re-query CCDS DB by Nucleotide ID:ENST00000320225Re-query CCDS DB by Protein ID:ENSP00000315859
Original member Current member EBI ENST00000397086.6 ENSP00000380275.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397086.6Link to Ensembl Protein Viewer:ENSP00000380275.2Re-query CCDS DB by Nucleotide ID:ENST00000397086Re-query CCDS DB by Protein ID:ENSP00000380275
Original member Current member EBI ENST00000565678.5 ENSP00000457723.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000565678.5Link to Ensembl Protein Viewer:ENSP00000457723.1Re-query CCDS DB by Nucleotide ID:ENST00000565678Re-query CCDS DB by Protein ID:ENSP00000457723
Original member Current member EBI ENST00000568631.5 ENSP00000457820.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568631.5Link to Ensembl Protein Viewer:ENSP00000457820.1Re-query CCDS DB by Nucleotide ID:ENST00000568631Re-query CCDS DB by Protein ID:ENSP00000457820
Original member Current member NCBI NM_001286625.1 NP_001273554.1 Accepted alive Link to Nucleotide Sequence:NM_001286625.1Link to Protein Sequence:NP_001273554.1Re-query CCDS DB by Nucleotide ID:NM_001286625Re-query CCDS DB by Protein ID:NP_001273554Link to BLAST:NP_001273554.1
Original member Current member NCBI NM_006711.5 NP_006702.1 Accepted alive Link to Nucleotide Sequence:NM_006711.5Link to Protein Sequence:NP_006702.1Re-query CCDS DB by Nucleotide ID:NM_006711Re-query CCDS DB by Protein ID:NP_006702Link to BLAST:NP_006702.1
Original member Current member NCBI NM_080594.4 NP_542161.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080594.4Link to Protein Sequence:NP_542161.1Re-query CCDS DB by Nucleotide ID:NM_080594Re-query CCDS DB by Protein ID:NP_542161Link to BLAST:NP_542161.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273554.1 305 Q15287-1 305 100% 0 0
NP_006702.1 305 Q15287-1 305 100% 0 0
NP_542161.1 305 Q15287-1 305 100% 0 0

Chromosomal Locations for CCDS 10465.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2253964 2254063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2255585 2255726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2262278 2262431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2262740 2262842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2263096 2263287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2264176 2264331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2264573 2264643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGATTTATCAGGAGTGAAAAAGAAGAGCTTGCTAGGAGTCAAAGAAAATAATAAAAAGTCCAGCACTA
GGGCTCCTTCACCTACCAAACGCAAAGACCGCTCAGATGAGAAGTCCAAGGATCGCTCAAAAGATAAAGG
GGCCACCAAGGAGTCGAGTGAGAAGGATCGCGGCCGGGACAAAACCCGAAAGAGGCGCAGCGCTTCCAGT
GGTAGCAGCAGTACCAGGTCTCGGTCCAGCTCGACTTCCAGCTCAGGCTCCAGCACCAGCACTGGCTCAA
GCAGTGGCTCCAGCTCTTCCTCAGCATCCAGCCGCTCAGGAAGCTCCAGCACCTCCCGCAGCTCCAGCTC
TAGCAGCTCTTCTGGCTCTCCAAGTCCTTCTCGGCGCAGACACGACAACAGGAGGCGCTCCCGCTCCAAA
TCCAAACCACCTAAAAGAGATGAAAAGGAGAGGAAAAGGCGGAGCCCATCTCCTAAGCCCACCAAAGTGC
ACATTGGGAGACTCACCCGGAATGTGACAAAGGATCACATCATGGAGATATTTTCCACCTATGGGAAAAT
TAAAATGATTGACATGCCCGTGGAAAGGATGCATCCCCATCTGTCCAAAGGCTATGCGTACGTAGAGTTT
GAGAATCCAGATGAAGCCGAGAAGGCGCTGAAGCACATGGATGGAGGACAAATTGATGGCCAGGAGATCA
CTGCCACCGCCGTGCTGGCCCCCTGGCCTAGGCCACCCCCCAGGAGATTCAGCCCTCCCAGGAGAATGTT
GCCACCACCGCCTATGTGGCGCAGGTCTCCCCCACGGATGAGGAGAAGGTCCCGCTCCCCGAGGCGCAGG
TCCCCCGTGCGCCGGAGATCACGGTCCCCGGGCCGCCGCCGCCACAGGAGCCGCTCCAGCTCCAACTCCT
CCCGATAA

Translation (305 aa):
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS
GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK
SKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEF
ENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR
SPVRRRSRSPGRRRHRSRSSSNSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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