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Report for CCDS10492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10492.1 Public Homo sapiens 16 MMP25 24 110 108 CCDS HistoryNCBI Gene:64386Re-query CCDS DB by CCDS ID:10492.1Re-query CCDS DB by GeneID:64386See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10492.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336577.9 ENSP00000337816.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336577.9Link to Ensembl Protein Viewer:ENSP00000337816.4Re-query CCDS DB by Nucleotide ID:ENST00000336577Re-query CCDS DB by Protein ID:ENSP00000337816
Original member Current member NCBI NM_022468.5 NP_071913.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022468.5Link to Protein Sequence:NP_071913.1Re-query CCDS DB by Nucleotide ID:NM_022468Re-query CCDS DB by Protein ID:NP_071913Link to BLAST:NP_071913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071913.1 562 Q9NPA2 562 100% 0 0

Chromosomal Locations for CCDS 10492.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3046918 3047016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3047415 3047547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3050009 3050144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3050254 3050546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3057033 3057209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3057310 3057394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3057531 3057613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3058181 3058333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3058412 3058669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3058827 3059098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGCGGCTGCGGCTCCGGCTTCTGGCGCTGCTGCTTCTGCTGCTGGCACCGCCCGCGCGCGCCCCGAAGC
CCTCGGCGCAGGACGTGAGCCTGGGCGTGGACTGGCTGACTCGCTATGGTTACCTGCCGCCACCCCACCC
TGCCCAGGCCCAGCTGCAGAGCCCTGAGAAGTTGCGCGATGCCATCAAAGTCATGCAGAGGTTCGCGGGG
CTGCCGGAGACCGGCCGCATGGACCCAGGGACAGTGGCCACCATGCGTAAGCCCCGCTGCTCCCTGCCTG
ACGTGCTGGGGGTGGCGGGGCTGGTCAGGCGGCGTCGCCGGTACGCTCTGAGCGGCAGCGTGTGGAAGAA
GCGAACCCTGACATGGAGGGTACGTTCCTTCCCCCAGAGCTCCCAGCTGAGCCAGGAGACCGTGCGGGTC
CTCATGAGCTATGCCCTGATGGCCTGGGGCATGGAGTCAGGCCTCACATTTCATGAGGTGGATTCCCCCC
AGGGCCAGGAGCCCGACATCCTCATCGACTTTGCCCGCGCCTTCCACCAGGACAGCTACCCCTTCGACGG
GTTGGGGGGCACCCTAGCCCATGCCTTCTTCCCTGGGGAGCACCCCATCTCCGGGGACACTCACTTTGAC
GATGAGGAGACCTGGACTTTTGGGTCAAAAGACGGCGAGGGGACCGACCTGTTTGCCGTGGCTGTCCATG
AGTTTGGCCACGCCCTGGGCCTGGGCCACTCCTCAGCCCCCAACTCCATTATGAGGCCCTTCTACCAGGG
TCCGGTGGGCGACCCTGACAAGTACCGCCTGTCTCAGGATGACCGCGATGGCCTGCAGCAACTCTATGGG
AAGGCGCCCCAAACCCCATATGACAAGCCCACAAGGAAACCCCTGGCTCCTCCGCCCCAGCCCCCGGCCT
CGCCCACACACAGCCCATCCTTCCCCATCCCTGATCGATGTGAGGGCAATTTTGACGCCATCGCCAACAT
CCGAGGGGAAACTTTCTTCTTCAAAGGCCCCTGGTTCTGGCGCCTCCAGCCCTCCGGACAGCTGGTGTCC
CCGCGACCCGCACGGCTGCACCGCTTCTGGGAGGGGCTGCCCGCCCAGGTGAGGGTGGTGCAGGCCGCCT
ATGCTCGGCACCGAGACGGCCGAATCCTCCTCTTTAGCGGGCCCCAGTTCTGGGTGTTCCAGGACCGGCA
GCTGGAGGGCGGGGCGCGGCCGCTCACGGAGCTGGGGCTGCCCCCGGGAGAGGAGGTGGACGCCGTGTTC
TCGTGGCCACAGAACGGGAAGACCTACCTGGTCCGCGGCCGGCAGTACTGGCGCTACGACGAGGCGGCGG
CGCGCCCGGACCCCGGCTACCCTCGCGACCTGAGCCTCTGGGAAGGCGCGCCCCCCTCCCCTGACGATGT
CACCGTCAGCAACGCAGGTGACACCTACTTCTTCAAGGGCGCCCACTACTGGCGCTTCCCCAAGAACAGC
ATCAAGACCGAGCCGGACGCCCCCCAGCCCATGGGGCCCAACTGGCTGGACTGCCCCGCCCCGAGCTCTG
GTCCCCGCGCCCCCAGGCCCCCCAAAGCGACCCCCGTGTCCGAAACCTGCGATTGTCAGTGCGAGCTCAA
CCAGGCCGCAGGACGTTGGCCTGCTCCCATCCCGCTGCTCCTCTTGCCCCTGCTGGTGGGGGGTGTAGCC
TCCCGCTGA

Translation (562 aa):
MRLRLRLLALLLLLLAPPARAPKPSAQDVSLGVDWLTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAG
LPETGRMDPGTVATMRKPRCSLPDVLGVAGLVRRRRRYALSGSVWKKRTLTWRVRSFPQSSQLSQETVRV
LMSYALMAWGMESGLTFHEVDSPQGQEPDILIDFARAFHQDSYPFDGLGGTLAHAFFPGEHPISGDTHFD
DEETWTFGSKDGEGTDLFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPDKYRLSQDDRDGLQQLYG
KAPQTPYDKPTRKPLAPPPQPPASPTHSPSFPIPDRCEGNFDAIANIRGETFFFKGPWFWRLQPSGQLVS
PRPARLHRFWEGLPAQVRVVQAAYARHRDGRILLFSGPQFWVFQDRQLEGGARPLTELGLPPGEEVDAVF
SWPQNGKTYLVRGRQYWRYDEAAARPDPGYPRDLSLWEGAPPSPDDVTVSNAGDTYFFKGAHYWRFPKNS
IKTEPDAPQPMGPNWLDCPAPSSGPRAPRPPKATPVSETCDCQCELNQAAGRWPAPIPLLLLPLLVGGVA
SR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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