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Report for CCDS10523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10523.1 Public Homo sapiens 16 ROGDI 24 110 108 CCDS HistoryNCBI Gene:79641Re-query CCDS DB by CCDS ID:10523.1Re-query CCDS DB by GeneID:79641See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10523.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322048.12 ENSP00000322832.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322048.12Link to Ensembl Protein Viewer:ENSP00000322832.6Re-query CCDS DB by Nucleotide ID:ENST00000322048Re-query CCDS DB by Protein ID:ENSP00000322832
Original member Current member NCBI NM_024589.3 NP_078865.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024589.3Link to Protein Sequence:NP_078865.1Re-query CCDS DB by Nucleotide ID:NM_024589Re-query CCDS DB by Protein ID:NP_078865Link to BLAST:NP_078865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078865.1 287 Q9GZN7 287 100% 0 0

Chromosomal Locations for CCDS 10523.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4797460 4797501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4797714 4797840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4797938 4797987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4798071 4798184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4798569 4798667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4799686 4799781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4800498 4800578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4801267 4801321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4801503 4801585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4802382 4802453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4802527 4802571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCCACCGTGATGGCAGCGACGGCGGCGGAGCGGGCGGTGCTGGAGGAGGAGTTCCGCTGGCTGCTGC
ACGACGAGGTGCACGCTGTGTTGAAGCAGCTGCAGGACATCCTCAAGGAGGCCTCTCTGCGCTTCACTCT
GCCGGGCTCCGGCACTGAGGGGCCCGCCAAGCAAGAGAACTTCATCCTAGGCAGCTGTGGCACAGACCAG
GTGAAGGGTGTGCTGACTCTGCAGGGGGATGCCCTCAGCCAGGCGGATGTGAACCTGAAGATGCCCCGGA
ACAACCAGCTGCTGCACTTCGCCTTCCGGGAGGACAAGCAGTGGAAGCTGCAGCAGATCCAGGATGCCAG
AAACCATGTGAGCCAAGCCATTTACCTGCTTACCAGCCGGGACCAGAGCTACCAGTTCAAGACGGGCGCT
GAGGTCCTCAAGCTGATGGACGCAGTGATGCTGCAGCTGACCAGAGCCCGAAACCGGCTCACCACCCCCG
CCACCCTCACCCTCCCCGAGATCGCCGCCAGCGGCCTCACGCGGATGTTCGCCCCTGCCCTGCCGTCCGA
CCTGCTGGTCAACGTCTACATCAACCTCAACAAGCTCTGCCTCACGGTGTACCAGCTGCATGCCCTGCAG
CCCAACTCCACCAAGAACTTCCGCCCAGCTGGGGGCGCGGTGCTGCATAGCCCTGGGGCCATGTTCGAGT
GGGGCTCTCAGCGCCTGGAGGTGAGCCACGTGCACAAAGTGGAGTGCGTGATCCCCTGGCTCAACGACGC
CCTGGTCTACTTCACCGTCTCCCTGCAGCTCTGCCAGCAGCTCAAGGACAAGATCTCCGTGTTCTCCAGC
TACTGGAGCTACAGACCCTTCTGA

Translation (287 aa):
MATVMAATAAERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQENFILGSCGTDQ
VKGVLTLQGDALSQADVNLKMPRNNQLLHFAFREDKQWKLQQIQDARNHVSQAIYLLTSRDQSYQFKTGA
EVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPSDLLVNVYINLNKLCLTVYQLHALQ
PNSTKNFRPAGGAVLHSPGAMFEWGSQRLEVSHVHKVECVIPWLNDALVYFTVSLQLCQQLKDKISVFSS
YWSYRPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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