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Report for CCDS10553.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10553.2 Public Homo sapiens 16 SNX29 24 110 108 CCDS HistoryNCBI Gene:92017Re-query CCDS DB by CCDS ID:10553.2Re-query CCDS DB by GeneID:92017See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 10553.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and homology data. It should be noted that the updated structure lacks full-length human transcript support, but it is supported by consistently spliced partial transcripts and by homologous transcript alignments

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10553.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000566228.6 ENSP00000456480.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000566228.6Link to Ensembl Protein Viewer:ENSP00000456480.1Re-query CCDS DB by Nucleotide ID:ENST00000566228Re-query CCDS DB by Protein ID:ENSP00000456480
Original member Current member NCBI NM_032167.5 NP_115543.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032167.5Link to Protein Sequence:NP_115543.3Re-query CCDS DB by Nucleotide ID:NM_032167Re-query CCDS DB by Protein ID:NP_115543Link to BLAST:NP_115543.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115543.3 813 Q8TEQ0-1 813 100% 0 0

Chromosomal Locations for CCDS 10553.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 11976807 11976813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 11999297 11999358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12002991 12003043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12027320 12027444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12042897 12043077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12046384 12046454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12048372 12048620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12051847 12052222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12061528 12061646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12069057 12069132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12078833 12078915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12126633 12126696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12129630 12129758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12199601 12199683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12277933 12278036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12356163 12356279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12398446 12398501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12403448 12403529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12477719 12477859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12524702 12524841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12568506 12568629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGAGCGGATCACAGAACAATGACAAAAGACAATTTCTGCTGGAGCGACTGCTGGATGCAGTGAAACAGT
GCCAGATCCGCTTTGGAGGGAGAAAGGAGATTGCCTCGGATTCCGACAGCAGGGTCACCTGTCTGTGTGC
CCAGTTTGAAGCCGTCCTGCAGCATGGCTTGAAGAGGAGTCGAGGATTGGCACTCACAGCGGCAGCGATC
AAGCAGGCAGCGGGCTTTGCCAGCAAAACCGAAACAGAGCCCGTGTTCTGGTACTACGTGAAGGAGGTCC
TCAACAAGCACGAGCTGCAGCGCTTCTACTCCCTGCGCCACATCGCCTCAGACGTGGGCCGGGGTCGCGC
CTGGCTGCGCTGTGCCCTCAACGAACACTCCCTGGAGCGCTACCTGCACATGCTCCTGGCCGACCGCTGC
AGGCTGAGCACTTTTTATGAAGACTGGTCTTTTGTGATGGATGAAGAAAGGTCCAGTATGCTTCCTACCA
TGGCAGCAGGTCTGAACTCCATACTCTTTGCGATTAACATCGACAACAAGGATTTGAACGGGCAGAGTAA
GTTTGCTCCCACCGTTTCAGACCTCTTAAAGGAGTCAACGCAGAACGTGACCTCCTTGCTGAAGGAGTCC
ACGCAAGGAGTGAGCAGCCTGTTCAGGGAGATCACAGCCTCCTCTGCCGTCTCCATCCTCATCAAACCTG
AACAGGAGACCGACCCCTTGCCTGTCGTGTCCAGGAATGTCAGTGCTGATGCCAAATGCAAAAAGGAGCG
GAAGAAGAAAAAGAAAGTGACCAACATAATCTCATTTGATGATGAGGAAGATGAGCAGAACTCTGGGGAC
GTGTTTAAAAAGACACCTGGGGCAGGGGAGAGCTCAGAGGACAACTCCGACCGCTCCTCTGTCAATATCA
TGTCCGCCTTTGAAAGCCCCTTCGGGCCTAACTCCAATGGAAGTCAGAGCAGCAACTCATGGAAAATTGA
TTCCCTGTCTTTGAACGGGGAGTTTGGGTACCAGAAGCTTGATGTGAAAAGCATCGATGATGAAGATGTG
GATGAAAACGAAGATGACGTGTATGGAAACTCATCAGGAAGGAAGCACAGGGGCCACTCGGAGTCGCCCG
AGAAGCCACTGGAAGGGAACACCTGCCTCTCCCAGATGCACAGCTGGGCTCCGCTGAAGGTGCTGCACAA
TGACTCCGACATCCTCTTCCCTGTCAGTGGCGTGGGCTCCTACAGCCCAGCAGATGCCCCCCTCGGAAGC
CTGGAGAACGGGACAGGACCAGAGGACCACGTTCTCCCAGATCCTGGACTTCGGTACAGTGTGGAAGCCA
GCTCTCCAGGCCACGGAAGTCCTCTGAGCAGCCTGTTACCTTCTGCCTCAGTGCCAGAGTCCATGACAAT
TAGTGAACTGCGCCAGGCCACTGTGGCCATGATGAACAGGAAGGATGAGCTGGAGGAGGAGAACAGATCA
CTGCGAAACCTGCTCGACGGTGAGATGGAGCACTCAGCCGCGCTCCGGCAAGAGGTGGACACCTTGAAAA
GGAAGGTGGCTGAACAGGAGGAGCGGCAGGGCATGAAGGTCCAGGCGCTGGCCAGAGAGAACGAGGTGCT
CAAAGTCCAACTGAAGAAATATGTAGGAGCTGTCCAGATGCTGAAAAGAGAAGGTCAAACAGCTGAAGTG
CCAAATCTTTGGAGTGTTGATGGAGAAGTTACAGTAGCTGAACAGAAGCCGGGAGAAATTGCTGAAGAAC
TCGCAAGCTCCTACGAAAGAAAGCTCATCGAGGTGGCAGAGATGCATGGCGAGCTGATTGAGTTCAACGA
GCGCCTGCACAGGGCCCTGGTAGCCAAGGAAGCCCTCGTGTCCCAGATGAGGCAGGAGCTCATCGATCTC
CGGGGACCGGTGCCTGGAGATTTGAGTCAAACGTCCGAAGACCAGAGTTTGTCGGATTTTGAAATATCAA
ACCGGGCGCTGATCAACGTCTGGATCCCCTCAGTGTTTCTCCGGGGCAAAGCAGCAAATGCATTCCACGT
GTATCAGGTCTACATCCGGATAAAAGACGATGAATGGAATATTTATCGCCGGTATACAGAGTTCAGGAGT
TTGCACCACAAGTTACAAAACAAGTACCCTCAAGTGAGGGCCTACAACTTCCCACCCAAAAAGGCCATTG
GAAACAAGGATGCCAAGTTTGTGGAGGAACGGAGAAAGCAGCTCCAGAATTACCTGCGCAGCGTCATGAA
CAAAGTCATCCAGATGGTCCCCGAGTTCGCTGCCAGCCCCAAGAAGGAGACCCTCATCCAGCTGATGCCC
TTCTTCGTCGACATCACCCCGCCCGGAGAGCCTGTGAACAGCCGGCCCAAAGCAGCTTCCCGCTTCCCCA
AACTGTCCCGGGGTCAGCCCCGGGAGACCCGCAACGTGGAGCCCCAGAGCGGTGACCTCTGA

Translation (813 aa):
MSGSQNNDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSRVTCLCAQFEAVLQHGLKRSRGLALTAAAI
KQAAGFASKTETEPVFWYYVKEVLNKHELQRFYSLRHIASDVGRGRAWLRCALNEHSLERYLHMLLADRC
RLSTFYEDWSFVMDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKES
TQGVSSLFREITASSAVSILIKPEQETDPLPVVSRNVSADAKCKKERKKKKKVTNIISFDDEEDEQNSGD
VFKKTPGAGESSEDNSDRSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNGEFGYQKLDVKSIDDEDV
DENEDDVYGNSSGRKHRGHSESPEKPLEGNTCLSQMHSWAPLKVLHNDSDILFPVSGVGSYSPADAPLGS
LENGTGPEDHVLPDPGLRYSVEASSPGHGSPLSSLLPSASVPESMTISELRQATVAMMNRKDELEEENRS
LRNLLDGEMEHSAALRQEVDTLKRKVAEQEERQGMKVQALARENEVLKVQLKKYVGAVQMLKREGQTAEV
PNLWSVDGEVTVAEQKPGEIAEELASSYERKLIEVAEMHGELIEFNERLHRALVAKEALVSQMRQELIDL
RGPVPGDLSQTSEDQSLSDFEISNRALINVWIPSVFLRGKAANAFHVYQVYIRIKDDEWNIYRRYTEFRS
LHHKLQNKYPQVRAYNFPPKKAIGNKDAKFVEERRKQLQNYLRSVMNKVIQMVPEFAASPKKETLIQLMP
FFVDITPPGEPVNSRPKAASRFPKLSRGQPRETRNVEPQSGDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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