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Report for CCDS10588.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
10588.1 |
Public |
Homo sapiens |
16 |
THUMPD1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:55623](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:10588.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:55623](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 10588.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000381337.6 |
ENSP00000370741.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000381337.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000370741.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000381337](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000370741](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000396083.7 |
ENSP00000379392.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000396083.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379392.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000396083](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379392](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000636554.1 |
ENSP00000490841.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000636554.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000490841.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000636554](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000490841](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001304550.2 |
NP_001291479.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001304550.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001291479.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001304550](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001291479](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001291479.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_017736.5 |
NP_060206.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_017736.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_060206.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_017736](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_060206](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_060206.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 10588.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1062 nt): ATGGCGGCCCCTGCCCAGCAGACTACTCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGC TGGCCAAGCGCGCTCGGCGCTGCGACGCTGGCGGGCCCCGTCAGCTAGAGCCCGGGCTACAGGGCATCCT CATCACCTGCAATATGAACGAGCGCAAGTGCGTGGAGGAGGCCTACAGCCTCCTCAACGAATACGGCGAC GACATGTATGGGCCAGAAAAGTTTACAGACAAGGATCAGCAGCCCTCTGGAAGTGAGGGAGAGGATGATG ATGCGGAGGCTGCCTTGAAGAAAGAAGTTGGTGACATTAAGGCATCTACAGAGATGAGGTTAAGAAGATT CCAGTCAGTGGAAAGTGGAGCAAATAACGTTGTCTTCATCAGGACACTTGGGATAGAGCCTGAGAAATTG GTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAAAAGAAGACTCGAGTTATTTTGCGAATGTTAC CCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCAGAAACATTTTTGGAACCCTG GTTTAAAGCTCCAAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCATGTGAATAGA GAAGAAGTTATCAGAGAATTGGCAGGAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCA ATCCACAGTACACAGTGGTAGTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACAT GTTGTTTAGAAAATACAATCTCCAGGAGGTGGTGAAGAGCCCTAAGGATCCGTCACAGCTTAACTCAAAG CAGGGAAATGGGAAAGAAGCTAAACTGGAATCTGCGGACAAATCAGACCAAAACAACACAGCAGAAGGAA AAAATAACCAGCAGGTACCAGAGAATACTGAGGAGCTGGGGCAGACAAAACCAACGTCTAATCCACAGGT GGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTCAAATGAAAAT GACTTCTCATAG
Translation (353 aa): MAAPAQQTTQPGGGKRKGKAQYVLAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEEAYSLLNEYGD DMYGPEKFTDKDQQPSGSEGEDDDAEAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIEPEKL VHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHVNR EEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSK QGNGKEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSKSNEN DFS
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