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Report for CCDS10590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10590.1 Public Homo sapiens 16 ERI2 24 110 108 CCDS HistoryNCBI Gene:112479Re-query CCDS DB by CCDS ID:10590.1Re-query CCDS DB by GeneID:112479See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300005.7 ENSP00000300005.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000300005.7Link to Ensembl Protein Viewer:ENSP00000300005.3Re-query CCDS DB by Nucleotide ID:ENST00000300005Re-query CCDS DB by Protein ID:ENSP00000300005
Original member Current member NCBI NM_080663.3 NP_542394.2 Accepted alive Link to Nucleotide Sequence:NM_080663.3Link to Protein Sequence:NP_542394.2Re-query CCDS DB by Nucleotide ID:NM_080663Re-query CCDS DB by Protein ID:NP_542394Link to BLAST:NP_542394.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542394.2 328 A8K979-4 328 100% 0 0

Chromosomal Locations for CCDS 10590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20780642 20780734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20789479 20789557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20790850 20790932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20799263 20799351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20799957 20800038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20800302 20800402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20801203 20801359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20802796 20802923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20803433 20803516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20803603 20803670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20806408 20806430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGCGACCAAGCGGCTCGCGCGGCAGCTTGGATTAATTAGGAGAAAGTCAATTGCGCCAGCAAATGGAA
ATCTCGGAAGAAGCAAATCCAAGCAGTTGTTTGACTACTTAATTGTCATTGATTTTGAATCGACATGCTG
GAATGATGGGAAGCACCACCATAGCCAGGAAATAATTGAGTTTCCAGCAGTGTTGCTGAACACATCAACT
GGACAGATTGACTCTGAGTTCCAGGCTTATGTTCAACCTCAGGAACATCCAATTCTTTCAGAATTTTGCA
TGGAATTGACAGGCATAAAGCAGGCTCAAGTTGATGAAGGAGTCCCTCTGAAGATTTGCTTATCTCAGTT
CTGTAAATGGATTCATAAGATTCAGCAACAGAAGAACATTATTTTTGCTACTGGGATTTCAGAGCCTTCT
GCTTCTGAAGTAAAATTATGTGCATTTGTTACTTGGTCAGACTGGGACTTGGGGGTTTGCCTGGAGTATG
AGTGTAAAAGAAAGCAGCTGTTAAAACCTGTGTTTTTAAATTCTTGGATTGATCTCAGAGCAACTTACAA
GCTTTTCTATAGGAGAAAACCAAAAGGACTAAGTGGTGCCTTGCAGGAAGTAGGAATAGAATTCTCAGGA
CGAGAACATTCTGGGTTGGACGATTCTCGGAATACTGCCCTTCTTGCTTGGAAAATGATCAGAGATGGTT
GTGTAATGAAAATTACAAGGTCGTTGAACAAGGGTCCCTTCCTCTTGCCTTCGTGGACCTGGAACAGTGA
TCTGGCCTCAGGGGACCAGCATGCTTTTCTTCAGCAAGAATTTGGCTGTGGAACCTACAGAACCTTACTT
CAGAAGCCCAATATGAGTAAACAGGAAAAGGGGAATATTCTCTGGTTGACAATGGTGTGGCTGTCACTGG
CATGTCTGCAAAGGAAAAACTACAATGACTGCATGTTAAACACAGCATCACAGACTGTTACCACTGAAAA
ATTTTGA

Translation (328 aa):
MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTST
GQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPS
ASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSG
REHSGLDDSRNTALLAWKMIRDGCVMKITRSLNKGPFLLPSWTWNSDLASGDQHAFLQQEFGCGTYRTLL
QKPNMSKQEKGNILWLTMVWLSLACLQRKNYNDCMLNTASQTVTTEKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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