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Report for CCDS1061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1061.1 Public Homo sapiens 1 C1orf43 24 110 108 CCDS HistoryNCBI Gene:25912Re-query CCDS DB by CCDS ID:1061.1Re-query CCDS DB by GeneID:25912See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1061.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350592.7 ENSP00000271925.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000350592.7Link to Ensembl Protein Viewer:ENSP00000271925.5Re-query CCDS DB by Nucleotide ID:ENST00000350592Re-query CCDS DB by Protein ID:ENSP00000271925
Original member Current member NCBI NM_015449.4 NP_056264.1 Accepted alive Link to Nucleotide Sequence:NM_015449.4Link to Protein Sequence:NP_056264.1Re-query CCDS DB by Nucleotide ID:NM_015449Re-query CCDS DB by Protein ID:NP_056264Link to BLAST:NP_056264.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056264.1 219 Q9BWL3-2 219 100% 0 0

Chromosomal Locations for CCDS 1061.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 154207453 154207648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154212320 154212378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154212458 154212624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154213893 154213946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154214457 154214574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154220342 154220407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGCGTCCGGCAGTAACTGGCTCTCCGGGGTGAATGTCGTGCTGGTGATGGCCTACGGGAGCCTGGACT
TGAAAGAGGAGATTGATATTCGACTCTCCAGGGTTCAGGATATCAAGTATGAGCCCCAGCTCCTTGCAGA
TGATGATGCTAGACTACTACAACTGGAAACCCAGGGAAATCAAAGTTGCTACAACTATCTGTATAGGATG
AAAGCTCTGGATGCCATTCGTACCTCTGAGATCCCATTTCATTCTGAAGGCCGGCATCCCCGTTCCTTAA
TGGGCAAGAATTTCCGCTCCTACCTGCTGGATCTGCGAAACACTAGTACGCCTTTCAAGGGTGTACGCAA
AGCACTCATTGATACCCTTTTGGATGGCTATGAAACAGCCCGCTATGGGACAGGGGTCTTTGGCCAGAAT
GAGTACCTACGCTATCAGGAGGCCCTGAGTGAGCTGGCCACTGCGGTTAAAGCACGAATTGGGAGCTCTC
AGCGACATCACCAGTCAGCAGCCAAAGACCTAACTCAGTCCCCTGAGGTCTCCCCAACAACCATCCAGGT
GACATACCTCCCCTCCAGTCAGAAGAGTAAACGTGCCAAGCACTTCCTTGAATTGAAGAGCTTTAAGGAT
AACTATAACACATTGGAGAGTACTCTGTGA

Translation (219 aa):
MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRM
KALDAIRTSEIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQN
EYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKD
NYNTLESTL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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