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Report for CCDS1062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1062.1 Public Homo sapiens 1 C1orf43 24 110 108 CCDS HistoryNCBI Gene:25912Re-query CCDS DB by CCDS ID:1062.1Re-query CCDS DB by GeneID:25912See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1062.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000362076.8 ENSP00000354496.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000362076.8Link to Ensembl Protein Viewer:ENSP00000354496.4Re-query CCDS DB by Nucleotide ID:ENST00000362076Re-query CCDS DB by Protein ID:ENSP00000354496
Original member Current member NCBI NM_138740.4 NP_620077.1 Accepted alive Link to Nucleotide Sequence:NM_138740.4Link to Protein Sequence:NP_620077.1Re-query CCDS DB by Nucleotide ID:NM_138740Re-query CCDS DB by Protein ID:NP_620077Link to BLAST:NP_620077.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620077.1 201 Q9BWL3-4 201 100% 0 0

Chromosomal Locations for CCDS 1062.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 154207453 154207648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154212320 154212378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154212458 154212624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154214457 154214574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154220342 154220407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGCGTCCGGCAGTAACTGGCTCTCCGGGGTGAATGTCGTGCTGGTGATGGCCTACGGGAGCCTGGACT
TGAAAGAGGAGATTGATATTCGACTCTCCAGGGTTCAGGATATCAAGTATGAGCCCCAGCTCCTTGCAGA
TGATGATGCTAGACTACTACAACTGGAAACCCAGGGAAATCAAAAGATCCCATTTCATTCTGAAGGCCGG
CATCCCCGTTCCTTAATGGGCAAGAATTTCCGCTCCTACCTGCTGGATCTGCGAAACACTAGTACGCCTT
TCAAGGGTGTACGCAAAGCACTCATTGATACCCTTTTGGATGGCTATGAAACAGCCCGCTATGGGACAGG
GGTCTTTGGCCAGAATGAGTACCTACGCTATCAGGAGGCCCTGAGTGAGCTGGCCACTGCGGTTAAAGCA
CGAATTGGGAGCTCTCAGCGACATCACCAGTCAGCAGCCAAAGACCTAACTCAGTCCCCTGAGGTCTCCC
CAACAACCATCCAGGTGACATACCTCCCCTCCAGTCAGAAGAGTAAACGTGCCAAGCACTTCCTTGAATT
GAAGAGCTTTAAGGATAACTATAACACATTGGAGAGTACTCTGTGA

Translation (201 aa):
MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQKIPFHSEGR
HPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKA
RIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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