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Report for CCDS10640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10640.1 Public Homo sapiens 16 ATXN2L 24 110 108 CCDS HistoryNCBI Gene:11273Re-query CCDS DB by CCDS ID:10640.1Re-query CCDS DB by GeneID:11273See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10640.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395547.6 ENSP00000378917.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395547.6Link to Ensembl Protein Viewer:ENSP00000378917.2Re-query CCDS DB by Nucleotide ID:ENST00000395547Re-query CCDS DB by Protein ID:ENSP00000378917
Original member Current member NCBI NM_001387167.1 NP_001374096.1 Accepted alive Link to Nucleotide Sequence:NM_001387167.1Link to Protein Sequence:NP_001374096.1Re-query CCDS DB by Nucleotide ID:NM_001387167Re-query CCDS DB by Protein ID:NP_001374096Link to BLAST:NP_001374096.1
Original member Current member NCBI NM_001387168.1 NP_001374097.1 Accepted alive Link to Nucleotide Sequence:NM_001387168.1Link to Protein Sequence:NP_001374097.1Re-query CCDS DB by Nucleotide ID:NM_001387168Re-query CCDS DB by Protein ID:NP_001374097Link to BLAST:NP_001374097.1
Original member Current member NCBI NM_148414.3 NP_680780.1 Accepted alive Link to Nucleotide Sequence:NM_148414.3Link to Protein Sequence:NP_680780.1Re-query CCDS DB by Nucleotide ID:NM_148414Re-query CCDS DB by Protein ID:NP_680780Link to BLAST:NP_680780.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001374096.1 1097 Q8WWM7-3 1097 100% 0 0
NP_001374097.1 1097 Q8WWM7-3 1097 100% 0 0
NP_680780.1 1097 Q8WWM7-3 1097 100% 0 0

Chromosomal Locations for CCDS 10640.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28823260 28823558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28825366 28825402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28825624 28825680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28825770 28825841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28826240 28826390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28826862 28826986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28829401 28829492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28829858 28830058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28830615 28830790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28830962 28831072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28832205 28832399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28832496 28832567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28832817 28832887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28833059 28833354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28833439 28833508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28834065 28834211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28834343 28834415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28834506 28834693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28835058 28835187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28835278 28835399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28835549 28835758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28835933 28836176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28836326 28836480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3294 nt):
ATGTTGAAGCCTCAGCCGCTACAACAGCCCTCCCAGCCCCAGCAGCCGCCCCCCACGCAACAGGCCGTGG
CCCGTCGGCCCCCCGGGGGCACCAGCCCTCCCAACGGCGGCCTCCCGGGGCCGCTGGCCACCTCTGCGGC
TCCTCCCGGGCCTCCAGCGGCCGCCTCCCCCTGCCTGGGGCCTGTGGCCGCTGCCGGGAGCGGGCTCCGC
CGGGGAGCCGAAGGCATCTTGGCGCCGCAGCCGCCGCCGCCGCAGCAACACCAGGAGAGGCCGGGGGCAG
CCGCCATCGGCAGCGCCAGGGGACAGAGCACAGGAAAGGGACCCCCACAGTCACCTGTGTTTGAAGGCGT
CTACAACAATTCCAGAATGCTGCATTTCCTTACAGCTGTTGTGGGCTCCACTTGTGATGTAAAGGTGAAA
AATGGTACCACTTATGAGGGTATCTTCAAGACGCTAAGCTCAAAGTTTGAACTAGCCGTGGATGCTGTGC
ACCGGAAAGCATCTGAGCCAGCAGGTGGCCCTCGTCGGGAGGACATTGTGGACACCATGGTGTTTAAGCC
AAGTGATGTCATGCTTGTTCACTTCCGAAATGTTGACTTCAACTATGCTACTAAAGACAAGTTCACCGAT
TCAGCCATTGCCATGAACTCGAAAGTGAATGGGGAACACAAAGAGAAGGTGCTTCAGCGCTGGGAGGGGG
GTGACAGCAACAGCGACGACTATGACCTCGAGTCTGACATGTCCAATGGATGGGACCCCAATGAAATGTT
CAAGTTCAATGAGGAGAACTACGGTGTGAAGACTACCTATGATAGCAGTCTTTCTTCTTATACGGTGCCC
TTAGAAAAGGACAACTCAGAAGAGTTTCGTCAGCGAGAGCTGCGTGCGGCCCAGTTGGCTCGAGAGATTG
AATCAAGCCCCCAGTACCGCCTACGGATCGCCATGGAGAACGACGATGGGCGCACTGAAGAGGAGAAGCA
CAGTGCAGTCCAGCGGCAGGGCTCAGGGCGGGAGAGCCCCAGCTTGGCATCCAGGGAGGGGAAGTATATC
CCTCTGCCTCAACGAGTCCGGGAAGGTCCCCGGGGAGGAGTTCGATGCAGCAGCTCTCGGGGCGGTCGGC
CTGGCCTTAGCTCTTTGCCACCTCGTGGCCCTCACCATCTGGACAACAGCAGCCCTGGCCCAGGTTCTGA
GGCCCGTGGTATCAATGGAGGCCCTTCCCGCATGTCCCCAAAGGCACAACGGCCTCTGAGAGGTGCCAAG
ACTCTGTCTTCGCCCAGTAATAGGCCTTCTGGAGAAACTTCTGTTCCACCTCCTCCTGCAGTGGGCCGGA
TGTATCCCCCGCGTTCTCCCAAGTCTGCTGCCCCTGCCCCAATCTCAGCTTCCTGTCCAGAGCCTCCCAT
CGGCTCGGCAGTGCCAACCTCTTCAGCCTCCATCCCTGTGACCTCATCAGTCTCAGATCCTGGAGTGGGC
TCCATTTCTCCAGCTTCTCCAAAGATCTCCCTGGCCCCCACAGATGTAAAAGAACTCTCTACCAAGGAAC
CTGGGAGAACTCTGGAGCCCCAGGAGCTGGCTCGGATAGCTGGGAAAGTCCCTGGTCTTCAGAATGAACA
GAAACGATTCCAACTGGAAGAACTGAGAAAGTTTGGGGCCCAGTTTAAGCTTCAGCCCAGTAGCTCCCCT
GAGAACAGCCTGGATCCTTTTCCTCCCCGGATCTTAAAGGAGGAGCCCAAAGGAAAGGAGAAAGAGGTTG
ATGGTCTGTTGACTTCAGAGCCCATGGGGTCTCCCGTCTCCTCCAAGACAGAGTCCGTATCGGATAAGGA
GGACAAACCACCCCTGGCACCATCAGGAGGCACTGAGGGGCCAGAGCAGCCCCCACCACCTTGTCCAAGC
CAAACTGGCAGCCCCCCGGTGGGCCTCATCAAGGGAGAAGACAAAGATGAGGGCCCTGTTGCTGAACAAG
TAAAGAAATCAACGTTGAACCCTAATGCTAAGGAGTTCAATCCTACAAAGCCTCTGCTGTCTGTGAATAA
ATCCACCAGTACCCCAACTTCTCCGGGGCCCCGGACTCATTCAACTCCCTCCATCCCGGTGCTGACAGCA
GGCCAGAGTGGGCTATACAGCCCCCAGTACATCTCCTACATACCTCAGATCCACATGGGACCAGCTGTGC
AGGCACCTCAGATGTATCCATATCCTGTATCCAATTCAGTGCCTGGGCAGCAGGGCAAGTACCGGGGAGC
AAAAGGCTCCCTTCCTCCGCAGCGCTCGGACCAACACCAGCCAGCCTCAGCCCCGCCGATGATGCAGGCC
GCCGCGGCTGCTGGCCCGCCTCTGGTGGCTGCCACGCCCTATTCTTCCTACATCCCCTACAACCCTCAGC
AGTTCCCAGGCCAGCCAGCCATGATGCAGCCCATGGCCCACTACCCCTCACAGCCGGTGTTTGCCCCCAT
GCTTCAGAGCAACCCACGCATGCTGACGTCGGGCAGCCATCCCCAGGCCATCGTGTCATCCTCTACCCCT
CAGTACCCTTCTGCAGAGCAGCCTACCCCCCAAGCCCTTTATGCCACTGTTCACCAGTCCTACCCACACC
ATGCCACACAGCTCCATGCCCACCAGCCGCAGCCGGCTACCACGCCTACTGGAAGCCAGCCGCAGTCCCA
GCATGCGGCCCCCAGTCCTGTCCAGCATCAGGCGGGGCAGGCCCCACACTTGGGCAGTGGACAGCCACAG
CAGAATCTGTACCACCCAGGGGCCCTGACAGGCACGCCGCCCTCTCTGCCACCGGGACCTTCTGCCCAGT
CCCCTCAGAGCAGCTTCCCCCAGCCAGCCGCTGTGTATGCCATCCACCACCAGCAGCTGCCCCACGGCTT
CACCAACATGGCCCATGTTACCCAGGCCCATGTCCAAACTGGAATCACAGCAGCCCCGCCCCCTCACCCT
GGGGCTCCCCACCCGCCCCAGGTGATGCTGCTGCACCCACCCCAGAGTCATGGGGGGCCCCCCCAAGGCG
CGGTGCCCCAGAGTGGGGTGCCTGCACTCTCAGCTTCCACACCCTCACCCTACCCCTACATCGGACACCC
CCAAGGTGAGCAGCCTGGCCAGGCGCCTGGATTTCCAGGAGGAGCCGATGACAGGATTCTATGTAGGGTG
GGCAGAAGCCACAGTCGCCGCCGCCAGGGGCTTGCTCCTGGCTCTGTCCTTTGCTTCCCTCCGTCCTCGC
TCAGTTGTGATCCAGCAGCCCCCCTCCCCACTGCCTCCCCAGCTCTCAGTGACCCCGACTGTCTCCTGAC
TTAG

Translation (1097 aa):
MLKPQPLQQPSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLR
RGAEGILAPQPPPPQQHQERPGAAAIGSARGQSTGKGPPQSPVFEGVYNNSRMLHFLTAVVGSTCDVKVK
NGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDTMVFKPSDVMLVHFRNVDFNYATKDKFTD
SAIAMNSKVNGEHKEKVLQRWEGGDSNSDDYDLESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVP
LEKDNSEEFRQRELRAAQLAREIESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLASREGKYI
PLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGAK
TLSSPSNRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVG
SISPASPKISLAPTDVKELSTKEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELRKFGAQFKLQPSSSP
ENSLDPFPPRILKEEPKGKEKEVDGLLTSEPMGSPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPPCPS
QTGSPPVGLIKGEDKDEGPVAEQVKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTA
GQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQA
AAAAGPPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTP
QYPSAEQPTPQALYATVHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQ
QNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHHQQLPHGFTNMAHVTQAHVQTGITAAPPPHP
GAPHPPQVMLLHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRILCRV
GRSHSRRRQGLAPGSVLCFPPSSLSCDPAAPLPTASPALSDPDCLLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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