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Report for CCDS107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
107.1 Public Homo sapiens 1 LZIC 24 110 108 CCDS HistoryNCBI Gene:84328Re-query CCDS DB by CCDS ID:107.1Re-query CCDS DB by GeneID:84328See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 107.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377213.1 ENSP00000366418.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377213.1Link to Ensembl Protein Viewer:ENSP00000366418.1Re-query CCDS DB by Nucleotide ID:ENST00000377213Re-query CCDS DB by Protein ID:ENSP00000366418
Original member Current member EBI ENST00000377223.6 ENSP00000366430.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377223.6Link to Ensembl Protein Viewer:ENSP00000366430.1Re-query CCDS DB by Nucleotide ID:ENST00000377223Re-query CCDS DB by Protein ID:ENSP00000366430
Original member Current member EBI ENST00000400903.6 ENSP00000383695.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400903.6Link to Ensembl Protein Viewer:ENSP00000383695.2Re-query CCDS DB by Nucleotide ID:ENST00000400903Re-query CCDS DB by Protein ID:ENSP00000383695
Original member Current member NCBI NM_001316973.2 NP_001303902.1 Accepted alive Link to Nucleotide Sequence:NM_001316973.2Link to Protein Sequence:NP_001303902.1Re-query CCDS DB by Nucleotide ID:NM_001316973Re-query CCDS DB by Protein ID:NP_001303902Link to BLAST:NP_001303902.1
Original member Current member NCBI NM_032368.5 NP_115744.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032368.5Link to Protein Sequence:NP_115744.2Re-query CCDS DB by Nucleotide ID:NM_032368Re-query CCDS DB by Protein ID:NP_115744Link to BLAST:NP_115744.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303902.1 190 Q8WZA0-1 190 100% 0 0
NP_115744.2 190 Q8WZA0-1 190 100% 0 0

Chromosomal Locations for CCDS 107.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 9930399 9930457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9931891 9931972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9932803 9932898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9934762 9934860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9935492 9935627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 9936519 9936619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGCTTCCAGAGGAAAGACAGAGACAAGCAAATTAAAGCAGAATTTAGAAGAACAGTTGGATAGACTCA
TGCAACAATTACAAGATCTGGAGGAATGCAGAGAGGAACTTGATACAGATGAATATGAAGAAACCAAAAA
GGAAACTCTGGAGCAACTAAGTGAATTTAATGATTCACTAAAGAAAATTATGTCTGGAAATATGACTTTG
GTAGATGAACTAAGTGGAATGCAGCTGGCTATTCAGGCAGCTATCAGCCAGGCCTTTAAAACCCCAGAGG
TCATCAGATTGTTTGCAAAGAAACAACCAGGTCAGCTTCGGACAAGGTTAGCAGAGATGGATAGAGATCT
GATGGTAGGAAAGCTGGAAAGAGACCTGTACACTCAACAGAAAGTGGAGATACTAACAGCTCTTAGGAAA
CTTGGAGAGAAGCTGACTGCAGATGATGAGGCCTTCTTGTCAGCAAATGCAGGTGCTATACTCAGCCAGT
TTGAGAAAGTCTCTACAGACCTTGGCTCTGGAGACAAAATTCTTGCTCTGGCAAGTTTTGAGGTTGAAAA
AACAAAAAAATGA

Translation (190 aa):
MASRGKTETSKLKQNLEEQLDRLMQQLQDLEECREELDTDEYEETKKETLEQLSEFNDSLKKIMSGNMTL
VDELSGMQLAIQAAISQAFKTPEVIRLFAKKQPGQLRTRLAEMDRDLMVGKLERDLYTQQKVEILTALRK
LGEKLTADDEAFLSANAGAILSQFEKVSTDLGSGDKILALASFEVEKTKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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