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Report for CCDS10798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10798.1 Public Homo sapiens 16 SETD6 24 110 108 CCDS HistoryNCBI Gene:79918Re-query CCDS DB by CCDS ID:10798.1Re-query CCDS DB by GeneID:79918See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310682.6 ENSP00000310082.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310682.6Link to Ensembl Protein Viewer:ENSP00000310082.2Re-query CCDS DB by Nucleotide ID:ENST00000310682Re-query CCDS DB by Protein ID:ENSP00000310082
Original member Current member NCBI NM_024860.3 NP_079136.2 Accepted alive Link to Nucleotide Sequence:NM_024860.3Link to Protein Sequence:NP_079136.2Re-query CCDS DB by Nucleotide ID:NM_024860Re-query CCDS DB by Protein ID:NP_079136Link to BLAST:NP_079136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079136.2 449 Q8TBK2-2 449 100% 0 0

Chromosomal Locations for CCDS 10798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58515538 58515564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58515791 58515880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58515953 58516097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58516202 58516343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58516478 58516672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58516808 58516928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58518051 58518231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58518401 58518543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58518724 58519029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGCGACCCAGGCGAAGCGTCCACGGGTGGCGGGGCCCGTGGACGGCGGCGACCTGGATCCTGTGGCCT
GCTTCCTGAGCTGGTGCCGGCGGGTGGGGCTGGAGCTGAGTCCCAAGGTGGCGGTCAGCCGGCAGGGCAC
GGTGGCCGGCTACGGCATGGTGGCCCGGGAGAGCGTGCAGGCCGGAGAGCTGTTGTTCGTGGTGCCGCGG
GCCGCGCTCCTGTCGCAGCACACCTGCTCCATCGGCGGCCTGCTGGAGCGAGAGCGAGTTGCGCTGCAGA
GCCAGTCGGGCTGGGTGCCACTGCTGCTGGCGCTGCTCCACGAGCTGCAGGCCCCGGCCTCACGCTGGAG
GCCCTACTTTGCGCTCTGGCCCGAGCTGGGCCGCTTGGAGCACCCGATGTTCTGGCCAGAGGAGGAGCGC
CGGTGCCTGCTCCAGGGCACAGGCGTACCTGAGGCCGTGGAGAAGGATTTGGCCAACATCCGCAGCGAGT
ACCAGTCCATCGTGCTGCCCTTCATGGAAGCCCACCCCGATCTCTTCAGCCTCAGGGTTCGCTCCCTAGA
ACTCTACCACCAGCTGGTGGCCCTTGTGATGGCCTATAGCTTTCAGGAACCACTGGAGGAAGAAGAGGAT
GAAAAGGAGCCCAACTCCCCCGTGATGGTGCCTGCTGCAGACATACTAAACCACTTAGCCAATCACAACG
CCAATCTAGAATACTCTGCGAATTGTCTTCGGATGGTAGCCACTCAGCCCATTCCTAAAGGCCATGAGAT
TTTCAACACTTATGGGCAAATGGCTAACTGGCAACTGATTCATATGTACGGTTTTGTTGAACCATATCCT
GACAACACAGATGACACAGCTGACATTCAGATGGTGACAGTTCGTGAGGCAGCATTACAGGGAACAAAAA
CTGAAGCTGAAAGGCACCTAGTGTACGAGCGCTGGGATTTCCTATGCAAACTGGAGATGGTAGGGGAAGA
GGGAGCCTTTGTGATAGGGAGGGAGGAGGTGCTGACTGAAGAGGAGCTGACCACCACACTAAAGGTACTG
TGCATGCCTGCTGAGGAGTTCAGAGAGCTTAAAGACCAGGATGGAGGGGGAGATGATAAAAGGGAAGAGG
GCAGCCTGACGATCACAAATATTCCCAAGCTCAAAGCATCGTGGAGACAGCTGCTTCAAAACAGTGTTCT
ACTGACTTTGCAGACCTATGCCACAGACTTAAAAACTGACCAAGGTTTACTCAGTAATAAGGAAGTCTAT
GCGAAACTCAGCTGGAGGGAACAGCAAGCCTTACAGGTTCGCTATGGTCAGAAGATGATCTTACATCAGT
TGTTGGAGCTGACAAGTTAG

Translation (449 aa):
MATQAKRPRVAGPVDGGDLDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPR
AALLSQHTCSIGGLLERERVALQSQSGWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEER
RCLLQGTGVPEAVEKDLANIRSEYQSIVLPFMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEEEED
EKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQMANWQLIHMYGFVEPYP
DNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEGAFVIGREEVLTEEELTTTLKVL
CMPAEEFRELKDQDGGGDDKREEGSLTITNIPKLKASWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVY
AKLSWREQQALQVRYGQKMILHQLLELTS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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