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Report for CCDS10800.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10800.1 Public Homo sapiens 16 SLC38A7 24 110 108 CCDS HistoryNCBI Gene:55238Re-query CCDS DB by CCDS ID:10800.1Re-query CCDS DB by GeneID:55238See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10800.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219320.9 ENSP00000219320.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000219320.9Link to Ensembl Protein Viewer:ENSP00000219320.3Re-query CCDS DB by Nucleotide ID:ENST00000219320Re-query CCDS DB by Protein ID:ENSP00000219320
Original member Current member EBI ENST00000570101.5 ENSP00000454646.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570101.5Link to Ensembl Protein Viewer:ENSP00000454646.1Re-query CCDS DB by Nucleotide ID:ENST00000570101Re-query CCDS DB by Protein ID:ENSP00000454646
Original member Current member NCBI NM_001369608.1 NP_001356537.1 Accepted alive Link to Nucleotide Sequence:NM_001369608.1Link to Protein Sequence:NP_001356537.1Re-query CCDS DB by Nucleotide ID:NM_001369608Re-query CCDS DB by Protein ID:NP_001356537Link to BLAST:NP_001356537.1
Original member Current member NCBI NM_001369609.1 NP_001356538.1 Accepted alive Link to Nucleotide Sequence:NM_001369609.1Link to Protein Sequence:NP_001356538.1Re-query CCDS DB by Nucleotide ID:NM_001369609Re-query CCDS DB by Protein ID:NP_001356538Link to BLAST:NP_001356538.1
Original member Current member NCBI NM_001369611.1 NP_001356540.1 Accepted alive Link to Nucleotide Sequence:NM_001369611.1Link to Protein Sequence:NP_001356540.1Re-query CCDS DB by Nucleotide ID:NM_001369611Re-query CCDS DB by Protein ID:NP_001356540Link to BLAST:NP_001356540.1
Original member Current member NCBI NM_018231.3 NP_060701.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018231.3Link to Protein Sequence:NP_060701.1Re-query CCDS DB by Nucleotide ID:NM_018231Re-query CCDS DB by Protein ID:NP_060701Link to BLAST:NP_060701.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356537.1 462 Q9NVC3-1 462 100% 0 0
NP_001356538.1 462 Q9NVC3-1 462 100% 0 0
NP_001356540.1 462 Q9NVC3-1 462 100% 0 0
NP_060701.1 462 Q9NVC3-1 462 100% 0 0

Chromosomal Locations for CCDS 10800.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58667385 58667487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58670113 58670167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58671045 58671244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58672096 58672243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58675940 58676054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58676289 58676346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58677326 58677424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58678333 58678474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58678696 58678894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58679857 58680126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGGCCCAGGTCAGCATCAACAATGACTACAGCGAGTGGGACTTGAGCACGGATGCCGGGGAGCGGGCTC
GGCTGCTGCAGAGTCCCTGTGTGGACACAGCCCCCAAGAGTGAGTGGGAAGCCTCTCCTGGGGGTCTGGA
CAGAGGCACCACTTCCACACTTGGGGCCATCTTCATCGTCGTCAACGCGTGCCTGGGTGCAGGGTTACTC
AACTTCCCAGCAGCCTTCAGCACTGCGGGGGGCGTGGCAGCAGGCATCGCACTGCAGATGGGTATGCTGG
TTTTCATCATCAGTGGCCTTGTCATCCTGGCCTACTGCTCCCAGGCCAGCAATGAGAGGACCTACCAGGA
GGTGGTATGGGCTGTGTGTGGCAAGCTGACAGGTGTGCTATGTGAGGTGGCCATCGCTGTCTACACCTTT
GGCACCTGCATTGCCTTCCTAATCATCATTGGCGACCAGCAGGACAAGATTATAGCTGTGATGGCGAAAG
AGCCGGAGGGGGCCAGCGGCCCTTGGTACACAGACCGCAAGTTCACCATCAGCCTCACTGCCTTCCTCTT
CATCCTGCCCCTCTCCATCCCCAGGGAGATTGGTTTCCAGAAATATGCCAGCTTCCTGAGCGTCGTGGGT
ACCTGGTACGTCACAGCCATCGTTATCATCAAGTACATCTGGCCAGATAAAGAGATGACCCCAGGGAACA
TCCTGACCAGGCCGGCTTCCTGGATGGCTGTGTTCAATGCCATGCCCACCATCTGCTTCGGATTTCAGTG
CCACGTCAGCAGTGTGCCCGTCTTCAACAGCATGCAGCAGCCTGAAGTGAAGACCTGGGGTGGAGTGGTG
ACAGCTGCCATGGTCATAGCCCTCGCTGTCTACATGGGGACAGGCATCTGTGGCTTCCTGACCTTTGGAG
CTGCTGTGGATCCTGACGTGCTCCTGTCCTATCCCTCGGAGGACATGGCCGTGGCCGTTGCCCGAGCCTT
CATCATCCTGAGCGTGCTCACCTCCTACCCTATCCTGCACTTCTGTGGGCGGGCGGTGGTGGAAGGCCTG
TGGCTGCGCTACCAGGGGGTGCCAGTGGAGGAGGACGTGGGGCGGGAGCGGCGGCGGCGAGTGCTGCAGA
CGCTGGTCTGGTTCCTGCTCACCCTGCTGCTGGCGCTCTTCATCCCTGACATCGGCAAGGTGATCTCAGT
CATTGGAGGCCTGGCCGCCTGCTTCATCTTCGTCTTCCCAGGGCTGTGCCTCATTCAAGCCAAACTCTCT
GAGATGGAAGAGGTCAAACCAGCCAGCTGGTGGGTGCTGGTCAGCTACGGAGTCCTCTTGGTCACCCTGG
GAGCCTTCATCTTCGGCCAGACCACAGCCAACGCCATCTTTGTGGATCTCTTGGCATAA

Translation (462 aa):
MAQVSINNDYSEWDLSTDAGERARLLQSPCVDTAPKSEWEASPGGLDRGTTSTLGAIFIVVNACLGAGLL
NFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTGVLCEVAIAVYTF
GTCIAFLIIIGDQQDKIIAVMAKEPEGASGPWYTDRKFTISLTAFLFILPLSIPREIGFQKYASFLSVVG
TWYVTAIVIIKYIWPDKEMTPGNILTRPASWMAVFNAMPTICFGFQCHVSSVPVFNSMQQPEVKTWGGVV
TAAMVIALAVYMGTGICGFLTFGAAVDPDVLLSYPSEDMAVAVARAFIILSVLTSYPILHFCGRAVVEGL
WLRYQGVPVEEDVGRERRRRVLQTLVWFLLTLLLALFIPDIGKVISVIGGLAACFIFVFPGLCLIQAKLS
EMEEVKPASWWVLVSYGVLLVTLGAFIFGQTTANAIFVDLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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