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Report for CCDS10811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10811.1 Public Homo sapiens 16 CMTM1 24 110 108 CCDS HistoryNCBI Gene:113540Re-query CCDS DB by CCDS ID:10811.1Re-query CCDS DB by GeneID:113540See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10811.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336328.10 ENSP00000337119.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336328.10Link to Ensembl Protein Viewer:ENSP00000337119.6Re-query CCDS DB by Nucleotide ID:ENST00000336328Re-query CCDS DB by Protein ID:ENSP00000337119
Original member Current member NCBI NM_181272.3 NP_851789.1 Accepted alive Link to Nucleotide Sequence:NM_181272.3Link to Protein Sequence:NP_851789.1Re-query CCDS DB by Nucleotide ID:NM_181272Re-query CCDS DB by Protein ID:NP_851789Link to BLAST:NP_851789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851789.1 116 Q8IZ96-6 116 100% 0 0

Chromosomal Locations for CCDS 10811.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 66566514 66566594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66577104 66577202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66578831 66579001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGGATCCTGAACACGCCAAACCTGAGTCATCCGAGGCACCTTCAGGGAACTTGAAACAACCGGAGACTG
CCGCAGCCCTGGATCTTACCAACAGTATCATTACAGCTGTGTTCCTTTCAGTAGTTGCCATCTTGGCCAT
GCAAGAAAAGAAAAGAAGGCATTTACTCTATGTCGGGGGGTCCCTGTGTCTCACAGCGGTAATCGTGTGT
TGCATCGATGCGTTTGTGGTCACCACGAAGATGAGGACCAACTTGAAAAGATTCCTGGGAGTCGAAGTTG
AAAGGAAGCTTTCCCCCGCCAAGGACGCCTACCCCGAAACCGGCCCCGACGCCCCGCAGAGGCCCGCCTG
A

Translation (116 aa):
MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVC
CIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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